miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12706 3' -45.6 NC_003349.1 + 1808 0.66 0.999967
Target:  5'- cCUAAACCGACaacug-UGUCGACAUc -3'
miRNA:   3'- -GAUUUGGUUGcuaguaACGGCUGUAa -5'
12706 3' -45.6 NC_003349.1 + 67224 0.66 0.999938
Target:  5'- -cGAAuCCGACGAauuguUCAgauccacauuugUUGCCGACAUc -3'
miRNA:   3'- gaUUU-GGUUGCU-----AGU------------AACGGCUGUAa -5'
12706 3' -45.6 NC_003349.1 + 56184 0.66 0.999937
Target:  5'- uCUGuGCCAACGAgauaaaaUCGcUGCUGGCGa- -3'
miRNA:   3'- -GAUuUGGUUGCU-------AGUaACGGCUGUaa -5'
12706 3' -45.6 NC_003349.1 + 80975 0.66 0.999918
Target:  5'- -cGAugUAAUGucauauccGUCAUUGCCGugGUUa -3'
miRNA:   3'- gaUUugGUUGC--------UAGUAACGGCugUAA- -5'
12706 3' -45.6 NC_003349.1 + 36158 0.66 0.999918
Target:  5'- ---cACCAcaGCGAUUAgcGCUGGCAUa -3'
miRNA:   3'- gauuUGGU--UGCUAGUaaCGGCUGUAa -5'
12706 3' -45.6 NC_003349.1 + 58420 0.66 0.999891
Target:  5'- ---cGCUucgacACGAUCGUUGaCCGACGUc -3'
miRNA:   3'- gauuUGGu----UGCUAGUAAC-GGCUGUAa -5'
12706 3' -45.6 NC_003349.1 + 18563 0.66 0.999891
Target:  5'- -aAGAUCGACGGUCAaagUGCCG-UGUUg -3'
miRNA:   3'- gaUUUGGUUGCUAGUa--ACGGCuGUAA- -5'
12706 3' -45.6 NC_003349.1 + 47770 0.67 0.999812
Target:  5'- aCUAAAaCAAUGAgcgUCAacagUGCCGACGUa -3'
miRNA:   3'- -GAUUUgGUUGCU---AGUa---ACGGCUGUAa -5'
12706 3' -45.6 NC_003349.1 + 39708 0.67 0.999756
Target:  5'- ----uUCGGCGGaagauaUCAUUGCCGAUAUa -3'
miRNA:   3'- gauuuGGUUGCU------AGUAACGGCUGUAa -5'
12706 3' -45.6 NC_003349.1 + 89995 0.69 0.998195
Target:  5'- gUAGACCcauGCGcauugCGUUGCCGGCGg- -3'
miRNA:   3'- gAUUUGGu--UGCua---GUAACGGCUGUaa -5'
12706 3' -45.6 NC_003349.1 + 84335 0.7 0.996858
Target:  5'- aCUAGACCGACGGUgAcgcGgCGACAUUc -3'
miRNA:   3'- -GAUUUGGUUGCUAgUaa-CgGCUGUAA- -5'
12706 3' -45.6 NC_003349.1 + 72287 0.75 0.931547
Target:  5'- aCUAGACCAACaAUUGUUGCCGuguCGUUg -3'
miRNA:   3'- -GAUUUGGUUGcUAGUAACGGCu--GUAA- -5'
12706 3' -45.6 NC_003349.1 + 35339 0.81 0.679653
Target:  5'- uUAAAauguaaUAACGAUCAUUGCCGACGUUu -3'
miRNA:   3'- gAUUUg-----GUUGCUAGUAACGGCUGUAA- -5'
12706 3' -45.6 NC_003349.1 + 35142 1.06 0.037397
Target:  5'- uCUAAACCAACGAUCAUUGCCGACAUUu -3'
miRNA:   3'- -GAUUUGGUUGCUAGUAACGGCUGUAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.