miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12706 5' -42.8 NC_003349.1 + 1533 0.66 1
Target:  5'- uGAGGCGgCGGCGGUGG-CGgcggUAUUGg -3'
miRNA:   3'- -UUUUGCaGCCGUUACUaGCa---AUAAUg -5'
12706 5' -42.8 NC_003349.1 + 82201 0.66 1
Target:  5'- cAGGCGUUcgGGCGGUGGUCGcag--ACg -3'
miRNA:   3'- uUUUGCAG--CCGUUACUAGCaauaaUG- -5'
12706 5' -42.8 NC_003349.1 + 88178 0.67 0.999999
Target:  5'- cGAGUGUCGGCAAUG--CGUUAcaaUUACu -3'
miRNA:   3'- uUUUGCAGCCGUUACuaGCAAU---AAUG- -5'
12706 5' -42.8 NC_003349.1 + 52766 0.67 0.999998
Target:  5'- cAAAAcCGUCGGCGAaGAUCGa------ -3'
miRNA:   3'- -UUUU-GCAGCCGUUaCUAGCaauaaug -5'
12706 5' -42.8 NC_003349.1 + 125902 0.67 0.999997
Target:  5'- cAAAAUGUUGGCAAUaAUCGUUu---- -3'
miRNA:   3'- -UUUUGCAGCCGUUAcUAGCAAuaaug -5'
12706 5' -42.8 NC_003349.1 + 35840 0.68 0.999993
Target:  5'- --cACGUUGGCGGUGuacgguUCGUUAg--- -3'
miRNA:   3'- uuuUGCAGCCGUUACu-----AGCAAUaaug -5'
12706 5' -42.8 NC_003349.1 + 23309 0.68 0.999993
Target:  5'- uGAAAcCGUCGGCGAaGAUCGa------ -3'
miRNA:   3'- -UUUU-GCAGCCGUUaCUAGCaauaaug -5'
12706 5' -42.8 NC_003349.1 + 92612 0.68 0.999993
Target:  5'- uGAAAcCGUCGGCGAaGAUCGa------ -3'
miRNA:   3'- -UUUU-GCAGCCGUUaCUAGCaauaaug -5'
12706 5' -42.8 NC_003349.1 + 93278 0.68 0.999993
Target:  5'- uGAAAcCGUCGGCGAaGAUCGa------ -3'
miRNA:   3'- -UUUU-GCAGCCGUUaCUAGCaauaaug -5'
12706 5' -42.8 NC_003349.1 + 58578 0.68 0.999986
Target:  5'- -uGACGUCGGuCAAcGAUCGUg----- -3'
miRNA:   3'- uuUUGCAGCC-GUUaCUAGCAauaaug -5'
12706 5' -42.8 NC_003349.1 + 108635 0.69 0.999981
Target:  5'- uGAAAcCGUCGGCAAaGAUCGa------ -3'
miRNA:   3'- -UUUU-GCAGCCGUUaCUAGCaauaaug -5'
12706 5' -42.8 NC_003349.1 + 33491 0.69 0.999973
Target:  5'- uGAGCGUgGGCGGauUGAuuucaaugUUGUUGUUGCu -3'
miRNA:   3'- uUUUGCAgCCGUU--ACU--------AGCAAUAAUG- -5'
12706 5' -42.8 NC_003349.1 + 125898 0.7 0.999839
Target:  5'- aAAAACGcCGGCAAaauucGAUUGUUAgUACa -3'
miRNA:   3'- -UUUUGCaGCCGUUa----CUAGCAAUaAUG- -5'
12706 5' -42.8 NC_003349.1 + 39636 0.71 0.999648
Target:  5'- gAAGACGaaGGCGGUGG-CGUUGUUGu -3'
miRNA:   3'- -UUUUGCagCCGUUACUaGCAAUAAUg -5'
12706 5' -42.8 NC_003349.1 + 111634 0.73 0.998323
Target:  5'- -cGACGUCGGUGAUGucAUgGUUGUUAa -3'
miRNA:   3'- uuUUGCAGCCGUUAC--UAgCAAUAAUg -5'
12706 5' -42.8 NC_003349.1 + 108347 0.75 0.993113
Target:  5'- uGAAAcCGUCGGCGAaGAUCG--AUUACa -3'
miRNA:   3'- -UUUU-GCAGCCGUUaCUAGCaaUAAUG- -5'
12706 5' -42.8 NC_003349.1 + 35301 0.91 0.418523
Target:  5'- cAAAAUGUCGGCAAUGAUCGUUGg--- -3'
miRNA:   3'- -UUUUGCAGCCGUUACUAGCAAUaaug -5'
12706 5' -42.8 NC_003349.1 + 35176 1.1 0.039782
Target:  5'- gAAAACGUCGGCAAUGAUCGUUAUUACa -3'
miRNA:   3'- -UUUUGCAGCCGUUACUAGCAAUAAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.