miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1271 3' -52.3 NC_001317.1 + 9092 0.67 0.64279
Target:  5'- -gAGGUCGGg---GGCGCGCuGCAUGu -3'
miRNA:   3'- cgUCCAGUUauagCCGCGCGcUGUAU- -5'
1271 3' -52.3 NC_001317.1 + 5323 0.67 0.630987
Target:  5'- --cGGUCAgagGUGUCaGCGCGgGugGUAc -3'
miRNA:   3'- cguCCAGU---UAUAGcCGCGCgCugUAU- -5'
1271 3' -52.3 NC_001317.1 + 737 0.69 0.503631
Target:  5'- aGCAGGUgaaacaCGGUAUCaGGCGCgaauucauGCGGCAg- -3'
miRNA:   3'- -CGUCCA------GUUAUAG-CCGCG--------CGCUGUau -5'
1271 3' -52.3 NC_001317.1 + 15491 0.7 0.449324
Target:  5'- uGCGGGUCAGcuUCGGCaGCGUcACGg- -3'
miRNA:   3'- -CGUCCAGUUauAGCCG-CGCGcUGUau -5'
1271 3' -52.3 NC_001317.1 + 27177 1.09 0.000829
Target:  5'- aGCAGGUCAAUAUCGGCGCGCGACAUAu -3'
miRNA:   3'- -CGUCCAGUUAUAGCCGCGCGCUGUAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.