miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12712 3' -55.4 NC_003349.1 + 82320 0.66 0.893096
Target:  5'- nGACGCAGUUc---CAGCGGUgGCGGu -3'
miRNA:   3'- uCUGCGUCGGcaucGUUGUCAgCGCC- -5'
12712 3' -55.4 NC_003349.1 + 82413 0.66 0.886262
Target:  5'- ---aGCAGCaGcGGCAGCGGUgGUGGa -3'
miRNA:   3'- ucugCGUCGgCaUCGUUGUCAgCGCC- -5'
12712 3' -55.4 NC_003349.1 + 116618 0.66 0.886262
Target:  5'- cGGugGCGGCUGcAGCAAC-GUUGUu- -3'
miRNA:   3'- -UCugCGUCGGCaUCGUUGuCAGCGcc -5'
12712 3' -55.4 NC_003349.1 + 26928 0.67 0.864405
Target:  5'- cGGAU--GGCCG-AGCAGCAGUCacuuGUGGa -3'
miRNA:   3'- -UCUGcgUCGGCaUCGUUGUCAG----CGCC- -5'
12712 3' -55.4 NC_003349.1 + 82208 0.67 0.856684
Target:  5'- gAGGuCGCAGgCGUucgGGCggUGGUCGCa- -3'
miRNA:   3'- -UCU-GCGUCgGCA---UCGuuGUCAGCGcc -5'
12712 3' -55.4 NC_003349.1 + 66126 0.67 0.848757
Target:  5'- aAGGCGCGGaaaaCGUgagcGGCGACAG-CGUGu -3'
miRNA:   3'- -UCUGCGUCg---GCA----UCGUUGUCaGCGCc -5'
12712 3' -55.4 NC_003349.1 + 17141 0.68 0.797244
Target:  5'- cGGugGCAacaCCG--GCGACGGUCGCGu -3'
miRNA:   3'- -UCugCGUc--GGCauCGUUGUCAGCGCc -5'
12712 3' -55.4 NC_003349.1 + 113460 0.7 0.697192
Target:  5'- uGACGCGgugccaaaccggccGCCGUAGaaacgGGCAGUCGCa- -3'
miRNA:   3'- uCUGCGU--------------CGGCAUCg----UUGUCAGCGcc -5'
12712 3' -55.4 NC_003349.1 + 1534 0.74 0.477532
Target:  5'- gAGGCgGCGGCgGUGGCGGCGGUauugGUGGu -3'
miRNA:   3'- -UCUG-CGUCGgCAUCGUUGUCAg---CGCC- -5'
12712 3' -55.4 NC_003349.1 + 113655 0.74 0.468047
Target:  5'- cAGACGCAGCCGaAGCcgUAGcCGCa- -3'
miRNA:   3'- -UCUGCGUCGGCaUCGuuGUCaGCGcc -5'
12712 3' -55.4 NC_003349.1 + 82344 0.76 0.379077
Target:  5'- cGACGCAGUUcUAGCGGCGGUCGuCGa -3'
miRNA:   3'- uCUGCGUCGGcAUCGUUGUCAGC-GCc -5'
12712 3' -55.4 NC_003349.1 + 113595 0.84 0.139759
Target:  5'- cAGuCGCAGCCGaAGCAACAGUCGaGGa -3'
miRNA:   3'- -UCuGCGUCGGCaUCGUUGUCAGCgCC- -5'
12712 3' -55.4 NC_003349.1 + 113625 1.11 0.002158
Target:  5'- cAGACGCAGCCGUAGCAACAGUCGCGGa -3'
miRNA:   3'- -UCUGCGUCGGCAUCGUUGUCAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.