miRNA: 3'- -UUCCa-UGUAA-----AUGGCUGCCGuCUGCu -5'
miRNA: 3'- uuCCA-------UGUAA--AUGGCUGCCGUCuGCU- -5'
miRNA: 3'- uucCAUGUAAAUGGCUGCcGUCugCu -5'
miRNA: 3'- -UUCCAUGUAAAUGGCUGCCGUCUGCU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12713 | 3' | -50.6 | NC_003349.1 | + | 87798 | 0.66 | 0.990771 |
|
Target: 5'- aAAGGagACGUUuccagUGCCGGCGGC-GAUGu -3' miRNA: 3'- -UUCCa-UGUAA-----AUGGCUGCCGuCUGCu -5' |
|||||||
| 12713 | 3' | -50.6 | NC_003349.1 | + | 77187 | 0.66 | 0.990643 |
|
Target: 5'- -cGGUgacgacgACAUUgcUAUCGAUGGCAG-CGAc -3' miRNA: 3'- uuCCA-------UGUAA--AUGGCUGCCGUCuGCU- -5' |
|||||||
| 12713 | 3' | -50.6 | NC_003349.1 | + | 112203 | 0.67 | 0.980341 |
|
Target: 5'- --cGUACGUUUGCUGGCGcCAGugGu -3' miRNA: 3'- uucCAUGUAAAUGGCUGCcGUCugCu -5' |
|||||||
| 12713 | 3' | -50.6 | NC_003349.1 | + | 120489 | 1.07 | 0.010441 |
|
Target: 5'- cAAGGUACAUUUACCGACGGCAGACGAc -3' miRNA: 3'- -UUCCAUGUAAAUGGCUGCCGUCUGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home