miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12717 3' -55.6 NC_003356.1 + 9585 1.08 0.000699
Target:  5'- cAAUUCCGGGGUUCCAAUCCCGGCACCc -3'
miRNA:   3'- -UUAAGGCCCCAAGGUUAGGGCCGUGG- -5'
12717 3' -55.6 NC_003356.1 + 35135 0.77 0.131713
Target:  5'- --aUCCGGGGcugaUAAUCCCGGCuGCCg -3'
miRNA:   3'- uuaAGGCCCCaag-GUUAGGGCCG-UGG- -5'
12717 3' -55.6 NC_003356.1 + 10955 0.69 0.427229
Target:  5'- aAAUUCCGGGGaauaUUCCug-CCgGGCAg- -3'
miRNA:   3'- -UUAAGGCCCC----AAGGuuaGGgCCGUgg -5'
12717 3' -55.6 NC_003356.1 + 12405 0.69 0.457013
Target:  5'- ---aCCGGGGca--AGUUCCGGCAUCu -3'
miRNA:   3'- uuaaGGCCCCaaggUUAGGGCCGUGG- -5'
12717 3' -55.6 NC_003356.1 + 34900 0.68 0.487876
Target:  5'- --aUCCGGGcuuuGUUCCGGUCagGGCAUUa -3'
miRNA:   3'- uuaAGGCCC----CAAGGUUAGggCCGUGG- -5'
12717 3' -55.6 NC_003356.1 + 33887 0.68 0.477476
Target:  5'- ---cCCGGcGGUUUCAAUCgCGGUaaucaGCCu -3'
miRNA:   3'- uuaaGGCC-CCAAGGUUAGgGCCG-----UGG- -5'
12717 3' -55.6 NC_003356.1 + 17274 0.67 0.519686
Target:  5'- --gUgCGGGGUUCgAGUCCUGGauggcgguCCa -3'
miRNA:   3'- uuaAgGCCCCAAGgUUAGGGCCgu------GG- -5'
12717 3' -55.6 NC_003356.1 + 22946 0.67 0.541339
Target:  5'- --cUCCGGGaucUCCAAUCaacgguucaaaaCgGGCACCg -3'
miRNA:   3'- uuaAGGCCCca-AGGUUAG------------GgCCGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.