miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12719 5' -54.9 NC_003356.1 + 19228 0.66 0.661947
Target:  5'- uGUuuGGUG-CGu---UCGCCGGGGCGu -3'
miRNA:   3'- -CGggCCAUaGUcauuAGUGGCCCCGU- -5'
12719 5' -54.9 NC_003356.1 + 36683 0.67 0.605855
Target:  5'- gGCCuaCGGU-UCAGaaUGAUCGCaCGGGGUc -3'
miRNA:   3'- -CGG--GCCAuAGUC--AUUAGUG-GCCCCGu -5'
12719 5' -54.9 NC_003356.1 + 39542 0.67 0.605855
Target:  5'- cGCCCGGUG-CAGguucUGAUUAauGGGGUc -3'
miRNA:   3'- -CGGGCCAUaGUC----AUUAGUggCCCCGu -5'
12719 5' -54.9 NC_003356.1 + 36307 0.68 0.550334
Target:  5'- uUCCGGUAUUguGGUGA--ACgGGGGCGg -3'
miRNA:   3'- cGGGCCAUAG--UCAUUagUGgCCCCGU- -5'
12719 5' -54.9 NC_003356.1 + 21258 0.68 0.517759
Target:  5'- uGUCCGGUAUuugcCGGUAugaaAUUACCGGaaGGCGc -3'
miRNA:   3'- -CGGGCCAUA----GUCAU----UAGUGGCC--CCGU- -5'
12719 5' -54.9 NC_003356.1 + 24124 0.69 0.485979
Target:  5'- cCCCGGcugGUUuuGUuGUUGCCGGGGCGc -3'
miRNA:   3'- cGGGCCa--UAGu-CAuUAGUGGCCCCGU- -5'
12719 5' -54.9 NC_003356.1 + 41581 0.71 0.387636
Target:  5'- gGCCCGGaUGUUaAGUuuUauaACCGGGGCu -3'
miRNA:   3'- -CGGGCC-AUAG-UCAuuAg--UGGCCCCGu -5'
12719 5' -54.9 NC_003356.1 + 12423 1.11 0.000559
Target:  5'- cGCCCGGUAUCAGUAAUCACCGGGGCAa -3'
miRNA:   3'- -CGGGCCAUAGUCAUUAGUGGCCCCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.