miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1272 3' -56.1 NC_001317.1 + 27116 0.68 0.344649
Target:  5'- cCGGAuaUGUcgCGCGCCGauauugaccUGCuGGCCGCGGa -3'
miRNA:   3'- -GUCU--ACAa-GCGCGGU---------ACG-UCGGCGUU- -5'
1272 3' -56.1 NC_001317.1 + 27443 1.05 0.000498
Target:  5'- gCAGAUGUUCGCGCCAUGCAGCCGCAAu -3'
miRNA:   3'- -GUCUACAAGCGCGGUACGUCGGCGUU- -5'
1272 3' -56.1 NC_001317.1 + 9550 0.7 0.24381
Target:  5'- -uGAUGcaccCGCGCCAUGC-GCUGCAc -3'
miRNA:   3'- guCUACaa--GCGCGGUACGuCGGCGUu -5'
1272 3' -56.1 NC_001317.1 + 18236 0.67 0.371801
Target:  5'- cCAGGUaaUCGCGCCAagUGCGGUCaCAAu -3'
miRNA:   3'- -GUCUAcaAGCGCGGU--ACGUCGGcGUU- -5'
1272 3' -56.1 NC_001317.1 + 17293 0.67 0.381169
Target:  5'- uCAGcGUGacucggcgUCGCGCCugaaugGCAGCUGCAu -3'
miRNA:   3'- -GUC-UACa-------AGCGCGGua----CGUCGGCGUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.