miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1272 5' -50.5 NC_001317.1 + 16166 0.66 0.817599
Target:  5'- cGGaCUGCGCCACC--GCCgcCAgacuGACg -3'
miRNA:   3'- -CC-GGCGCGGUGGuuUGGa-GUaau-UUG- -5'
1272 5' -50.5 NC_001317.1 + 19676 0.66 0.807417
Target:  5'- aGG-CGCGCC-CCGGugCUCAa----- -3'
miRNA:   3'- -CCgGCGCGGuGGUUugGAGUaauuug -5'
1272 5' -50.5 NC_001317.1 + 29639 0.66 0.807417
Target:  5'- aGCCGuCGCUgguucgaauGCCGAGCCg---UAAGCg -3'
miRNA:   3'- cCGGC-GCGG---------UGGUUUGGaguaAUUUG- -5'
1272 5' -50.5 NC_001317.1 + 1681 0.66 0.797018
Target:  5'- cGCCGaCGCgCGCCGAAagguuaCUCAUgu-ACa -3'
miRNA:   3'- cCGGC-GCG-GUGGUUUg-----GAGUAauuUG- -5'
1272 5' -50.5 NC_001317.1 + 9723 0.66 0.775629
Target:  5'- aGCCGCGCCAaaucaCGcGCCUCc------ -3'
miRNA:   3'- cCGGCGCGGUg----GUuUGGAGuaauuug -5'
1272 5' -50.5 NC_001317.1 + 14992 0.67 0.741136
Target:  5'- -cUUGCG-CACCAGcguggugacuccgGCCUCGUUGAGCa -3'
miRNA:   3'- ccGGCGCgGUGGUU-------------UGGAGUAAUUUG- -5'
1272 5' -50.5 NC_001317.1 + 2809 0.68 0.707736
Target:  5'- cGGCUGCGCC------CCUUGUUGAACa -3'
miRNA:   3'- -CCGGCGCGGugguuuGGAGUAAUUUG- -5'
1272 5' -50.5 NC_001317.1 + 6965 0.68 0.660534
Target:  5'- cGGCUGCGCCagacuGCC--GCCgguUUAAGCa -3'
miRNA:   3'- -CCGGCGCGG-----UGGuuUGGaguAAUUUG- -5'
1272 5' -50.5 NC_001317.1 + 15589 0.69 0.648622
Target:  5'- uGCCGCGCCgggggcugauGCCGuGCCgcugCGUUuuGCu -3'
miRNA:   3'- cCGGCGCGG----------UGGUuUGGa---GUAAuuUG- -5'
1272 5' -50.5 NC_001317.1 + 29903 0.71 0.519039
Target:  5'- aGGCCaGCGCUACCGAuguuuuuuauGCCUguaUGAGCa -3'
miRNA:   3'- -CCGG-CGCGGUGGUU----------UGGAguaAUUUG- -5'
1272 5' -50.5 NC_001317.1 + 12361 0.71 0.507667
Target:  5'- gGGCa-UGgCGCCAGACCUCAUUcacGAGCu -3'
miRNA:   3'- -CCGgcGCgGUGGUUUGGAGUAA---UUUG- -5'
1272 5' -50.5 NC_001317.1 + 24769 0.71 0.485254
Target:  5'- cGGaagCGCGCCGCCGAGCCaUAccGGGCg -3'
miRNA:   3'- -CCg--GCGCGGUGGUUUGGaGUaaUUUG- -5'
1272 5' -50.5 NC_001317.1 + 445 0.73 0.421092
Target:  5'- aGCCaGCGCCGCC-GACCUgA-UGGACg -3'
miRNA:   3'- cCGG-CGCGGUGGuUUGGAgUaAUUUG- -5'
1272 5' -50.5 NC_001317.1 + 6538 0.75 0.326428
Target:  5'- aGGCCGCGCCccguaaaacgACUAAACCgcgCAcgcgUAAACc -3'
miRNA:   3'- -CCGGCGCGG----------UGGUUUGGa--GUa---AUUUG- -5'
1272 5' -50.5 NC_001317.1 + 27405 1.14 0.00062
Target:  5'- cGGCCGCGCCACCAAACCUCAUUAAACa -3'
miRNA:   3'- -CCGGCGCGGUGGUUUGGAGUAAUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.