Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1272 | 5' | -50.5 | NC_001317.1 | + | 16166 | 0.66 | 0.817599 |
Target: 5'- cGGaCUGCGCCACC--GCCgcCAgacuGACg -3' miRNA: 3'- -CC-GGCGCGGUGGuuUGGa-GUaau-UUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 29639 | 0.66 | 0.807417 |
Target: 5'- aGCCGuCGCUgguucgaauGCCGAGCCg---UAAGCg -3' miRNA: 3'- cCGGC-GCGG---------UGGUUUGGaguaAUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 19676 | 0.66 | 0.807417 |
Target: 5'- aGG-CGCGCC-CCGGugCUCAa----- -3' miRNA: 3'- -CCgGCGCGGuGGUUugGAGUaauuug -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 1681 | 0.66 | 0.797018 |
Target: 5'- cGCCGaCGCgCGCCGAAagguuaCUCAUgu-ACa -3' miRNA: 3'- cCGGC-GCG-GUGGUUUg-----GAGUAauuUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 9723 | 0.66 | 0.775629 |
Target: 5'- aGCCGCGCCAaaucaCGcGCCUCc------ -3' miRNA: 3'- cCGGCGCGGUg----GUuUGGAGuaauuug -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 14992 | 0.67 | 0.741136 |
Target: 5'- -cUUGCG-CACCAGcguggugacuccgGCCUCGUUGAGCa -3' miRNA: 3'- ccGGCGCgGUGGUU-------------UGGAGUAAUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 2809 | 0.68 | 0.707736 |
Target: 5'- cGGCUGCGCC------CCUUGUUGAACa -3' miRNA: 3'- -CCGGCGCGGugguuuGGAGUAAUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 6965 | 0.68 | 0.660534 |
Target: 5'- cGGCUGCGCCagacuGCC--GCCgguUUAAGCa -3' miRNA: 3'- -CCGGCGCGG-----UGGuuUGGaguAAUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 15589 | 0.69 | 0.648622 |
Target: 5'- uGCCGCGCCgggggcugauGCCGuGCCgcugCGUUuuGCu -3' miRNA: 3'- cCGGCGCGG----------UGGUuUGGa---GUAAuuUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 29903 | 0.71 | 0.519039 |
Target: 5'- aGGCCaGCGCUACCGAuguuuuuuauGCCUguaUGAGCa -3' miRNA: 3'- -CCGG-CGCGGUGGUU----------UGGAguaAUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 12361 | 0.71 | 0.507667 |
Target: 5'- gGGCa-UGgCGCCAGACCUCAUUcacGAGCu -3' miRNA: 3'- -CCGgcGCgGUGGUUUGGAGUAA---UUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 24769 | 0.71 | 0.485254 |
Target: 5'- cGGaagCGCGCCGCCGAGCCaUAccGGGCg -3' miRNA: 3'- -CCg--GCGCGGUGGUUUGGaGUaaUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 445 | 0.73 | 0.421092 |
Target: 5'- aGCCaGCGCCGCC-GACCUgA-UGGACg -3' miRNA: 3'- cCGG-CGCGGUGGuUUGGAgUaAUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 6538 | 0.75 | 0.326428 |
Target: 5'- aGGCCGCGCCccguaaaacgACUAAACCgcgCAcgcgUAAACc -3' miRNA: 3'- -CCGGCGCGG----------UGGUUUGGa--GUa---AUUUG- -5' |
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1272 | 5' | -50.5 | NC_001317.1 | + | 27405 | 1.14 | 0.00062 |
Target: 5'- cGGCCGCGCCACCAAACCUCAUUAAACa -3' miRNA: 3'- -CCGGCGCGGUGGUUUGGAGUAAUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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