miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12725 5' -51.5 NC_003356.1 + 24453 1.14 0.000737
Target:  5'- aGCAUACCAACAGACUCAGCCAGCACCc -3'
miRNA:   3'- -CGUAUGGUUGUCUGAGUCGGUCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 21473 0.75 0.353393
Target:  5'- uGCAgcACCAgcGCGGACUgAGCCGcCACCa -3'
miRNA:   3'- -CGUa-UGGU--UGUCUGAgUCGGUcGUGG- -5'
12725 5' -51.5 NC_003356.1 + 19075 0.74 0.38069
Target:  5'- cGCAguagagGCCAgaGCAcGGC-CAGCaCAGCACCa -3'
miRNA:   3'- -CGUa-----UGGU--UGU-CUGaGUCG-GUCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 24173 0.74 0.399654
Target:  5'- ---aGCCGGgGGAUaaaUCAGCCAGgCACCa -3'
miRNA:   3'- cguaUGGUUgUCUG---AGUCGGUC-GUGG- -5'
12725 5' -51.5 NC_003356.1 + 24319 0.74 0.380689
Target:  5'- cUAUACCGgaaaGCGGAUcagCAGCCAGCggGCCa -3'
miRNA:   3'- cGUAUGGU----UGUCUGa--GUCGGUCG--UGG- -5'
12725 5' -51.5 NC_003356.1 + 38090 0.71 0.547259
Target:  5'- -gAUACCGACGGugUacuugaCGGUCuGGCACCa -3'
miRNA:   3'- cgUAUGGUUGUCugA------GUCGG-UCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 19779 0.71 0.524855
Target:  5'- cGCAgaaCAGCAGAUUaaaaaacacuucCAGCCAGC-CCg -3'
miRNA:   3'- -CGUaugGUUGUCUGA------------GUCGGUCGuGG- -5'
12725 5' -51.5 NC_003356.1 + 22172 0.71 0.536016
Target:  5'- cGCAUAaCCuccuGCugcGACUCAuGCCAGUugCg -3'
miRNA:   3'- -CGUAU-GGu---UGu--CUGAGU-CGGUCGugG- -5'
12725 5' -51.5 NC_003356.1 + 19041 0.7 0.604398
Target:  5'- ---cACCAACAcgccCUCAGCaAGCACCg -3'
miRNA:   3'- cguaUGGUUGUcu--GAGUCGgUCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 21729 0.7 0.627508
Target:  5'- gGCAggGCCAgcACAGACUCuGCaGGUugCu -3'
miRNA:   3'- -CGUa-UGGU--UGUCUGAGuCGgUCGugG- -5'
12725 5' -51.5 NC_003356.1 + 36846 0.7 0.581394
Target:  5'- ---gACCGggACAGACUC-GCUGGCACUu -3'
miRNA:   3'- cguaUGGU--UGUCUGAGuCGGUCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 39340 0.7 0.597483
Target:  5'- gGCAUAaacauCCAGCAGGCcgucaccauucuguuUCAgGCCGGUAUCg -3'
miRNA:   3'- -CGUAU-----GGUUGUCUG---------------AGU-CGGUCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 26373 0.68 0.707906
Target:  5'- uGCGUGCCGccugcCGGACgcuugacuUCAGCCAGUucaGCUu -3'
miRNA:   3'- -CGUAUGGUu----GUCUG--------AGUCGGUCG---UGG- -5'
12725 5' -51.5 NC_003356.1 + 27846 0.68 0.741387
Target:  5'- gGCAa---AGguGGCUCAGCCAGgCGCUg -3'
miRNA:   3'- -CGUauggUUguCUGAGUCGGUC-GUGG- -5'
12725 5' -51.5 NC_003356.1 + 34798 0.68 0.730331
Target:  5'- aGCGaacGCCAGCGGAagUUCuGCCuGCGCUu -3'
miRNA:   3'- -CGUa--UGGUUGUCU--GAGuCGGuCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 1634 0.68 0.719166
Target:  5'- uGCAuUACCucACAcaacACUCAGCCcacggcaguGGCACCa -3'
miRNA:   3'- -CGU-AUGGu-UGUc---UGAGUCGG---------UCGUGG- -5'
12725 5' -51.5 NC_003356.1 + 15710 0.67 0.784261
Target:  5'- aCAUACCAAUA-ACUCuugucgaaaaAGCCAGCAa- -3'
miRNA:   3'- cGUAUGGUUGUcUGAG----------UCGGUCGUgg -5'
12725 5' -51.5 NC_003356.1 + 2048 0.67 0.763121
Target:  5'- uGUAUACCGACAGu----GCCGGuUACCc -3'
miRNA:   3'- -CGUAUGGUUGUCugaguCGGUC-GUGG- -5'
12725 5' -51.5 NC_003356.1 + 21635 0.67 0.752321
Target:  5'- cGCAUGgCGgaACAGACgCAGaCAGCaACCu -3'
miRNA:   3'- -CGUAUgGU--UGUCUGaGUCgGUCG-UGG- -5'
12725 5' -51.5 NC_003356.1 + 25609 0.66 0.833839
Target:  5'- gGCGcUGCCuGCGuuGCUCuGgCAGCACCg -3'
miRNA:   3'- -CGU-AUGGuUGUc-UGAGuCgGUCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.