miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12728 5' -53.4 NC_003356.1 + 30264 0.66 0.716192
Target:  5'- -cGCAaugacccggccCGUCCGACaCAGACGGGg -3'
miRNA:   3'- aaCGUguuu-------GCGGGCUGcGUUUGCCC- -5'
12728 5' -53.4 NC_003356.1 + 19161 0.67 0.644021
Target:  5'- -gGCACGgcugcGGCGCUCGGCGgGgcGACGGu -3'
miRNA:   3'- aaCGUGU-----UUGCGGGCUGCgU--UUGCCc -5'
12728 5' -53.4 NC_003356.1 + 29747 0.7 0.49862
Target:  5'- cUGUACAcuggAGCGCCCGACauaCAGACucaGGGu -3'
miRNA:   3'- aACGUGU----UUGCGGGCUGc--GUUUG---CCC- -5'
12728 5' -53.4 NC_003356.1 + 38476 0.71 0.426364
Target:  5'- aUGCACAGACGCcugcaacacaCCGAUcCGGACGuGGg -3'
miRNA:   3'- aACGUGUUUGCG----------GGCUGcGUUUGC-CC- -5'
12728 5' -53.4 NC_003356.1 + 29699 0.75 0.272511
Target:  5'- gUGUACAggUGCCUGugGUGAAUGGc -3'
miRNA:   3'- aACGUGUuuGCGGGCugCGUUUGCCc -5'
12728 5' -53.4 NC_003356.1 + 28210 1.08 0.001361
Target:  5'- uUUGCACAAACGCCCGACGCAAACGGGc -3'
miRNA:   3'- -AACGUGUUUGCGGGCUGCGUUUGCCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.