Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1273 | 3' | -52.6 | NC_001317.1 | + | 7113 | 0.66 | 0.691677 |
Target: 5'- ----gGCCACCGGCaa--AGGUGaCAa -3' miRNA: 3'- gaaaaUGGUGGCCGguagUCCAC-GUc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 12289 | 0.66 | 0.691677 |
Target: 5'- ----cACCAaCGGCCAUCAcGGUGa-- -3' miRNA: 3'- gaaaaUGGUgGCCGGUAGU-CCACguc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 21147 | 0.66 | 0.668299 |
Target: 5'- ----cAUCGCCGacauagguuCCAUCAGGUGCGa -3' miRNA: 3'- gaaaaUGGUGGCc--------GGUAGUCCACGUc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 4091 | 0.66 | 0.668299 |
Target: 5'- ---aUGCCAUCGGgCAaCAGGccgcGCAGg -3' miRNA: 3'- gaaaAUGGUGGCCgGUaGUCCa---CGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 14081 | 0.67 | 0.632971 |
Target: 5'- ---aUGCCGCCGGgUuauUCAGGUuuuuGCGGc -3' miRNA: 3'- gaaaAUGGUGGCCgGu--AGUCCA----CGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 20188 | 0.67 | 0.621177 |
Target: 5'- uUUUUGCUgACUGGCUuugcuuUCGGGUGCu- -3' miRNA: 3'- gAAAAUGG-UGGCCGGu-----AGUCCACGuc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 15094 | 0.67 | 0.619998 |
Target: 5'- ----aGCCAuugugUCGGCCAgcaccugcgcgguUCGGGUGUAGu -3' miRNA: 3'- gaaaaUGGU-----GGCCGGU-------------AGUCCACGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 7659 | 0.68 | 0.528133 |
Target: 5'- ---gUAUUGCCGGUUAUCAGGUGg-- -3' miRNA: 3'- gaaaAUGGUGGCCGGUAGUCCACguc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 19979 | 0.69 | 0.483484 |
Target: 5'- --cUUGCCGCUGGCCGUCAuc-GCAc -3' miRNA: 3'- gaaAAUGGUGGCCGGUAGUccaCGUc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 24777 | 0.7 | 0.410114 |
Target: 5'- ----cGCCGCCGaGCCAUacCGGGcgUGCAGu -3' miRNA: 3'- gaaaaUGGUGGC-CGGUA--GUCC--ACGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 12274 | 0.71 | 0.400207 |
Target: 5'- ---cUGCCaguGCCGgacGCCgGUCAGGUGCAGc -3' miRNA: 3'- gaaaAUGG---UGGC---CGG-UAGUCCACGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 2731 | 0.71 | 0.390453 |
Target: 5'- ----cGCCACUGGCCAUCGuc-GCAGa -3' miRNA: 3'- gaaaaUGGUGGCCGGUAGUccaCGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 21264 | 0.72 | 0.318209 |
Target: 5'- ----cGCCACCGacauaaguuCCAUCGGGUGCAa -3' miRNA: 3'- gaaaaUGGUGGCc--------GGUAGUCCACGUc -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 11593 | 0.74 | 0.235999 |
Target: 5'- gUUUUAUCAagcacaaugUCGGCCA-CAGGUGCAGc -3' miRNA: 3'- gAAAAUGGU---------GGCCGGUaGUCCACGUC- -5' |
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1273 | 3' | -52.6 | NC_001317.1 | + | 28833 | 1.11 | 0.000608 |
Target: 5'- aCUUUUACCACCGGCCAUCAGGUGCAGg -3' miRNA: 3'- -GAAAAUGGUGGCCGGUAGUCCACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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