miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1273 3' -52.6 NC_001317.1 + 12289 0.66 0.691677
Target:  5'- ----cACCAaCGGCCAUCAcGGUGa-- -3'
miRNA:   3'- gaaaaUGGUgGCCGGUAGU-CCACguc -5'
1273 3' -52.6 NC_001317.1 + 7113 0.66 0.691677
Target:  5'- ----gGCCACCGGCaa--AGGUGaCAa -3'
miRNA:   3'- gaaaaUGGUGGCCGguagUCCAC-GUc -5'
1273 3' -52.6 NC_001317.1 + 4091 0.66 0.668299
Target:  5'- ---aUGCCAUCGGgCAaCAGGccgcGCAGg -3'
miRNA:   3'- gaaaAUGGUGGCCgGUaGUCCa---CGUC- -5'
1273 3' -52.6 NC_001317.1 + 21147 0.66 0.668299
Target:  5'- ----cAUCGCCGacauagguuCCAUCAGGUGCGa -3'
miRNA:   3'- gaaaaUGGUGGCc--------GGUAGUCCACGUc -5'
1273 3' -52.6 NC_001317.1 + 14081 0.67 0.632971
Target:  5'- ---aUGCCGCCGGgUuauUCAGGUuuuuGCGGc -3'
miRNA:   3'- gaaaAUGGUGGCCgGu--AGUCCA----CGUC- -5'
1273 3' -52.6 NC_001317.1 + 20188 0.67 0.621177
Target:  5'- uUUUUGCUgACUGGCUuugcuuUCGGGUGCu- -3'
miRNA:   3'- gAAAAUGG-UGGCCGGu-----AGUCCACGuc -5'
1273 3' -52.6 NC_001317.1 + 15094 0.67 0.619998
Target:  5'- ----aGCCAuugugUCGGCCAgcaccugcgcgguUCGGGUGUAGu -3'
miRNA:   3'- gaaaaUGGU-----GGCCGGU-------------AGUCCACGUC- -5'
1273 3' -52.6 NC_001317.1 + 7659 0.68 0.528133
Target:  5'- ---gUAUUGCCGGUUAUCAGGUGg-- -3'
miRNA:   3'- gaaaAUGGUGGCCGGUAGUCCACguc -5'
1273 3' -52.6 NC_001317.1 + 19979 0.69 0.483484
Target:  5'- --cUUGCCGCUGGCCGUCAuc-GCAc -3'
miRNA:   3'- gaaAAUGGUGGCCGGUAGUccaCGUc -5'
1273 3' -52.6 NC_001317.1 + 24777 0.7 0.410114
Target:  5'- ----cGCCGCCGaGCCAUacCGGGcgUGCAGu -3'
miRNA:   3'- gaaaaUGGUGGC-CGGUA--GUCC--ACGUC- -5'
1273 3' -52.6 NC_001317.1 + 12274 0.71 0.400207
Target:  5'- ---cUGCCaguGCCGgacGCCgGUCAGGUGCAGc -3'
miRNA:   3'- gaaaAUGG---UGGC---CGG-UAGUCCACGUC- -5'
1273 3' -52.6 NC_001317.1 + 2731 0.71 0.390453
Target:  5'- ----cGCCACUGGCCAUCGuc-GCAGa -3'
miRNA:   3'- gaaaaUGGUGGCCGGUAGUccaCGUC- -5'
1273 3' -52.6 NC_001317.1 + 21264 0.72 0.318209
Target:  5'- ----cGCCACCGacauaaguuCCAUCGGGUGCAa -3'
miRNA:   3'- gaaaaUGGUGGCc--------GGUAGUCCACGUc -5'
1273 3' -52.6 NC_001317.1 + 11593 0.74 0.235999
Target:  5'- gUUUUAUCAagcacaaugUCGGCCA-CAGGUGCAGc -3'
miRNA:   3'- gAAAAUGGU---------GGCCGGUaGUCCACGUC- -5'
1273 3' -52.6 NC_001317.1 + 28833 1.11 0.000608
Target:  5'- aCUUUUACCACCGGCCAUCAGGUGCAGg -3'
miRNA:   3'- -GAAAAUGGUGGCCGGUAGUCCACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.