miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1273 5' -50.5 NC_001317.1 + 6404 0.69 0.632778
Target:  5'- aGGcCUGAcccugcGUGAUGCCGGUaugaaUG-CAGAg -3'
miRNA:   3'- -CC-GACUaa----CACUACGGCCA-----ACaGUCU- -5'
1273 5' -50.5 NC_001317.1 + 6750 0.68 0.692003
Target:  5'- aGGUUGGgcgGUGGacGCCGGUcgccGUCAGGu -3'
miRNA:   3'- -CCGACUaa-CACUa-CGGCCAa---CAGUCU- -5'
1273 5' -50.5 NC_001317.1 + 11291 0.68 0.692002
Target:  5'- uGCUGAggacGUGAgGCCGGUUG-CuGAc -3'
miRNA:   3'- cCGACUaa--CACUaCGGCCAACaGuCU- -5'
1273 5' -50.5 NC_001317.1 + 14159 0.71 0.515635
Target:  5'- uGGCUGGUcuUGUGAgggGCUauUUGUCAGGg -3'
miRNA:   3'- -CCGACUA--ACACUa--CGGccAACAGUCU- -5'
1273 5' -50.5 NC_001317.1 + 28796 1.13 0.000787
Target:  5'- cGGCUGAUUGUGAUGCCGGUUGUCAGAg -3'
miRNA:   3'- -CCGACUAACACUACGGCCAACAGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.