miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12730 3' -53 NC_003356.1 + 3000 0.66 0.741284
Target:  5'- -cUGAcCUGCGCCagaaGaUCGCCGACGCa -3'
miRNA:   3'- gaAUUuGACGCGGcg--C-GGUGGUUGUG- -5'
12730 3' -53 NC_003356.1 + 1277 0.66 0.741284
Target:  5'- aUUAAACcagaUGCGUaaUGUGCCACCGugGu -3'
miRNA:   3'- gAAUUUG----ACGCG--GCGCGGUGGUugUg -5'
12730 3' -53 NC_003356.1 + 32572 0.66 0.762926
Target:  5'- -aUAuGCUGC-CCGUGCCGCgaCGACGg -3'
miRNA:   3'- gaAUuUGACGcGGCGCGGUG--GUUGUg -5'
12730 3' -53 NC_003356.1 + 31434 0.66 0.734692
Target:  5'- -----uCUGCGCCGCcGaugaacgcgggauccCCGCCAGCAg -3'
miRNA:   3'- gaauuuGACGCGGCG-C---------------GGUGGUUGUg -5'
12730 3' -53 NC_003356.1 + 15992 0.66 0.719159
Target:  5'- ---uGGCUG-GCagGUGCCGCUAACACc -3'
miRNA:   3'- gaauUUGACgCGg-CGCGGUGGUUGUG- -5'
12730 3' -53 NC_003356.1 + 35288 0.67 0.650932
Target:  5'- -gUGAACUG-GCUGCGCCAUuUGGCAUc -3'
miRNA:   3'- gaAUUUGACgCGGCGCGGUG-GUUGUG- -5'
12730 3' -53 NC_003356.1 + 27017 0.67 0.673881
Target:  5'- -aUGAACUucGCGCCGCuGCggugCGCCuuGCGCa -3'
miRNA:   3'- gaAUUUGA--CGCGGCG-CG----GUGGu-UGUG- -5'
12730 3' -53 NC_003356.1 + 24252 0.68 0.598011
Target:  5'- --cAGACUGcCGUguacggucgagauauCGUGCCACCAGcCACg -3'
miRNA:   3'- gaaUUUGAC-GCG---------------GCGCGGUGGUU-GUG- -5'
12730 3' -53 NC_003356.1 + 33423 0.68 0.615244
Target:  5'- aCUUAAGgUGaCGUuugacaaCGCGCCGCCGggaauGCGCg -3'
miRNA:   3'- -GAAUUUgAC-GCG-------GCGCGGUGGU-----UGUG- -5'
12730 3' -53 NC_003356.1 + 34598 0.75 0.246187
Target:  5'- --cAGACUGCGCUcaGCagaGCCGCCAACAg -3'
miRNA:   3'- gaaUUUGACGCGG--CG---CGGUGGUUGUg -5'
12730 3' -53 NC_003356.1 + 40554 0.77 0.19202
Target:  5'- ----uGCUGCGCCuGCGCCACCAu--- -3'
miRNA:   3'- gaauuUGACGCGG-CGCGGUGGUugug -5'
12730 3' -53 NC_003356.1 + 28724 1.11 0.000785
Target:  5'- cCUUAAACUGCGCCGCGCCACCAACACg -3'
miRNA:   3'- -GAAUUUGACGCGGCGCGGUGGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.