miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12731 5' -62 NC_003356.1 + 28973 1.11 0.000123
Target:  5'- uCUCGCCCCCCUGCGGAUCCGGCAUCCa -3'
miRNA:   3'- -GAGCGGGGGGACGCCUAGGCCGUAGG- -5'
12731 5' -62 NC_003356.1 + 31790 0.8 0.033444
Target:  5'- -gCGCCCCCaguaCUGCGGuUCCGGCAcCCg -3'
miRNA:   3'- gaGCGGGGG----GACGCCuAGGCCGUaGG- -5'
12731 5' -62 NC_003356.1 + 22329 0.74 0.094665
Target:  5'- aUCGCUCCCCUGC---UUCGGCGUCa -3'
miRNA:   3'- gAGCGGGGGGACGccuAGGCCGUAGg -5'
12731 5' -62 NC_003356.1 + 37574 0.73 0.109798
Target:  5'- -gCGCCCCCCUGUGGAauguaguaauaacguUCCauaacgcgGGCAcgCCa -3'
miRNA:   3'- gaGCGGGGGGACGCCU---------------AGG--------CCGUa-GG- -5'
12731 5' -62 NC_003356.1 + 32256 0.68 0.25867
Target:  5'- gUUGCCCCCaUUGCGGcaaucucUCCGGaggCCa -3'
miRNA:   3'- gAGCGGGGG-GACGCCu------AGGCCguaGG- -5'
12731 5' -62 NC_003356.1 + 13376 0.67 0.2718
Target:  5'- -aUGCCCCuggCCUGCGuAUCCGGguuguacacuuCAUCCc -3'
miRNA:   3'- gaGCGGGG---GGACGCcUAGGCC-----------GUAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.