miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12734 5' -52 NC_003356.1 + 39493 0.66 0.831444
Target:  5'- aCCGCCcAGAcGCACAuccugUACACC--GCCu -3'
miRNA:   3'- cGGCGGcUUU-CGUGU-----AUGUGGuaCGG- -5'
12734 5' -52 NC_003356.1 + 27117 0.66 0.831444
Target:  5'- uGCCGCCGAu-GCAaaa--GCCAUuGCg -3'
miRNA:   3'- -CGGCGGCUuuCGUguaugUGGUA-CGg -5'
12734 5' -52 NC_003356.1 + 5781 0.66 0.82197
Target:  5'- aCCGCCGA----ACu--CGCCAUGCUg -3'
miRNA:   3'- cGGCGGCUuucgUGuauGUGGUACGG- -5'
12734 5' -52 NC_003356.1 + 19614 0.66 0.816182
Target:  5'- aCCGCUGAugucauGGCugGccugguugcugaugcUGCugUAUGCCu -3'
miRNA:   3'- cGGCGGCUu-----UCGugU---------------AUGugGUACGG- -5'
12734 5' -52 NC_003356.1 + 40190 0.66 0.81228
Target:  5'- -gCGCUGAuugauGGCGCAgGCAuccCCAUGUCc -3'
miRNA:   3'- cgGCGGCUu----UCGUGUaUGU---GGUACGG- -5'
12734 5' -52 NC_003356.1 + 42285 0.66 0.792296
Target:  5'- aGCCGCgGuacGUucuuGCAUACGaCGUGCCg -3'
miRNA:   3'- -CGGCGgCuuuCG----UGUAUGUgGUACGG- -5'
12734 5' -52 NC_003356.1 + 32457 0.67 0.760988
Target:  5'- uUCGCCaGAGaauccAGUACGUGCAgCAUGgCCc -3'
miRNA:   3'- cGGCGG-CUU-----UCGUGUAUGUgGUAC-GG- -5'
12734 5' -52 NC_003356.1 + 40573 0.67 0.750249
Target:  5'- cGCUGCCGcuuccGCGCucugcUGCGCCugcGCCa -3'
miRNA:   3'- -CGGCGGCuuu--CGUGu----AUGUGGua-CGG- -5'
12734 5' -52 NC_003356.1 + 37713 0.67 0.749167
Target:  5'- uGuuGCCGGAAGCGgauuguaUGUAUuCgGUGCCa -3'
miRNA:   3'- -CggCGGCUUUCGU-------GUAUGuGgUACGG- -5'
12734 5' -52 NC_003356.1 + 24249 0.68 0.72839
Target:  5'- aCUGCCGu--GUACGgucgagAUAUCGUGCCa -3'
miRNA:   3'- cGGCGGCuuuCGUGUa-----UGUGGUACGG- -5'
12734 5' -52 NC_003356.1 + 30444 0.68 0.72839
Target:  5'- uGCCGCCuuccacauAAGC-CGU-CGCCAcGCCg -3'
miRNA:   3'- -CGGCGGcu------UUCGuGUAuGUGGUaCGG- -5'
12734 5' -52 NC_003356.1 + 41625 0.68 0.706114
Target:  5'- gGCCGCCaGAuaAAGCgACAUAUguACCAgGCa -3'
miRNA:   3'- -CGGCGG-CU--UUCG-UGUAUG--UGGUaCGg -5'
12734 5' -52 NC_003356.1 + 22233 0.68 0.694852
Target:  5'- uGCCGCCGuGAGUGCcggguuuuucuUugGCCccGCCu -3'
miRNA:   3'- -CGGCGGCuUUCGUGu----------AugUGGuaCGG- -5'
12734 5' -52 NC_003356.1 + 29546 0.69 0.672141
Target:  5'- uCUGCUGAcGGCAUcaGCACCAgGCUg -3'
miRNA:   3'- cGGCGGCUuUCGUGuaUGUGGUaCGG- -5'
12734 5' -52 NC_003356.1 + 2504 0.69 0.672141
Target:  5'- gGCCGCCGGgcuaagggaaAAGCAgAUGaACCcccauaAUGCCc -3'
miRNA:   3'- -CGGCGGCU----------UUCGUgUAUgUGG------UACGG- -5'
12734 5' -52 NC_003356.1 + 9822 0.72 0.481194
Target:  5'- uGCCuGCCacuuuAAGCGCAUGCACCAgaacaucGUCg -3'
miRNA:   3'- -CGG-CGGcu---UUCGUGUAUGUGGUa------CGG- -5'
12734 5' -52 NC_003356.1 + 2705 0.73 0.416757
Target:  5'- aGCUGCCGGAcaGGCugAUGCGauucgcacaaaagcCCAgGCCg -3'
miRNA:   3'- -CGGCGGCUU--UCGugUAUGU--------------GGUaCGG- -5'
12734 5' -52 NC_003356.1 + 23926 0.73 0.407019
Target:  5'- cGUCGCCGGgaaugugcuuuccaAucacguuGCugAUACACCAUGUCa -3'
miRNA:   3'- -CGGCGGCU--------------Uu------CGugUAUGUGGUACGG- -5'
12734 5' -52 NC_003356.1 + 19333 0.74 0.390797
Target:  5'- cGCCagGCUGAAAGCGCcUGCGgCAuuguUGCCa -3'
miRNA:   3'- -CGG--CGGCUUUCGUGuAUGUgGU----ACGG- -5'
12734 5' -52 NC_003356.1 + 19226 0.76 0.296482
Target:  5'- cCCGCCGA--GCGCcgcaGCCGUGCCg -3'
miRNA:   3'- cGGCGGCUuuCGUGuaugUGGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.