miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12736 3' -53.6 NC_003356.1 + 31857 1.07 0.001538
Target:  5'- uCCACCACUUUCCGGACAUCCGCCAUUu -3'
miRNA:   3'- -GGUGGUGAAAGGCCUGUAGGCGGUAA- -5'
12736 3' -53.6 NC_003356.1 + 32073 0.73 0.348234
Target:  5'- gCCAUCAuCUgaCCGGAUucuUCCGCCGUg -3'
miRNA:   3'- -GGUGGU-GAaaGGCCUGu--AGGCGGUAa -5'
12736 3' -53.6 NC_003356.1 + 12891 0.72 0.365792
Target:  5'- uUCACCAa--UCUGGAUGUUCGCCAUUu -3'
miRNA:   3'- -GGUGGUgaaAGGCCUGUAGGCGGUAA- -5'
12736 3' -53.6 NC_003356.1 + 33372 0.68 0.604396
Target:  5'- cCCAUCACca--CGuGGCAUCUGCCAUc -3'
miRNA:   3'- -GGUGGUGaaagGC-CUGUAGGCGGUAa -5'
12736 3' -53.6 NC_003356.1 + 31962 0.68 0.627121
Target:  5'- gCCGCCACgauUUCgGcGAUAccuUCCGCCGa- -3'
miRNA:   3'- -GGUGGUGa--AAGgC-CUGU---AGGCGGUaa -5'
12736 3' -53.6 NC_003356.1 + 26644 0.67 0.649865
Target:  5'- cCC-CCACccaUCCGGACGUugugCCGCCc-- -3'
miRNA:   3'- -GGuGGUGaa-AGGCCUGUA----GGCGGuaa -5'
12736 3' -53.6 NC_003356.1 + 37412 0.67 0.661216
Target:  5'- cCCGCCGauc-CCGGuuCGUCUGCCAc- -3'
miRNA:   3'- -GGUGGUgaaaGGCCu-GUAGGCGGUaa -5'
12736 3' -53.6 NC_003356.1 + 29995 0.66 0.706214
Target:  5'- gCGCCGCUacccgcagUUCCGG-CuUCCGUCAc- -3'
miRNA:   3'- gGUGGUGA--------AAGGCCuGuAGGCGGUaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.