miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12739 5' -45.3 NC_003356.1 + 40493 0.66 0.99456
Target:  5'- aUGGUGgcgCAGGcgcagcagaGCGcGGAAGCGGCAgCg -3'
miRNA:   3'- aAUUAUa--GUUC---------UGC-CCUUCGUUGUgG- -5'
12739 5' -45.3 NC_003356.1 + 12059 0.66 0.993554
Target:  5'- ----gAUCAcAGAUGGGggGCGcaACUg -3'
miRNA:   3'- aauuaUAGU-UCUGCCCuuCGUugUGG- -5'
12739 5' -45.3 NC_003356.1 + 38669 0.66 0.989616
Target:  5'- -aAAUAUUcGGACGGGgcGUcuUGCCa -3'
miRNA:   3'- aaUUAUAGuUCUGCCCuuCGuuGUGG- -5'
12739 5' -45.3 NC_003356.1 + 39455 0.68 0.973297
Target:  5'- aUUGGUAUUggGcgugGCGGGAAuGCAcCAUCa -3'
miRNA:   3'- -AAUUAUAGuuC----UGCCCUU-CGUuGUGG- -5'
12739 5' -45.3 NC_003356.1 + 31975 0.68 0.973297
Target:  5'- ----cGUgAAGAUGGGGguGGCcuuuGACACCa -3'
miRNA:   3'- aauuaUAgUUCUGCCCU--UCG----UUGUGG- -5'
12739 5' -45.3 NC_003356.1 + 9067 0.68 0.969954
Target:  5'- ------cCAGGcACGGGcAGCAGCAgCCg -3'
miRNA:   3'- aauuauaGUUC-UGCCCuUCGUUGU-GG- -5'
12739 5' -45.3 NC_003356.1 + 36656 0.69 0.958153
Target:  5'- -aGAUAUUuGGAUGGuGggGgGAUACCu -3'
miRNA:   3'- aaUUAUAGuUCUGCC-CuuCgUUGUGG- -5'
12739 5' -45.3 NC_003356.1 + 31639 0.69 0.953125
Target:  5'- -aGGUGUCGGcaccgcuGAaGGGGAuGCAGCGCCa -3'
miRNA:   3'- aaUUAUAGUU-------CUgCCCUU-CGUUGUGG- -5'
12739 5' -45.3 NC_003356.1 + 21460 0.7 0.937974
Target:  5'- ----gGUgAAGGCuGGGu-GCAGCACCa -3'
miRNA:   3'- aauuaUAgUUCUG-CCCuuCGUUGUGG- -5'
12739 5' -45.3 NC_003356.1 + 3345 0.71 0.912443
Target:  5'- -aAAUG-CAGGGCGGGGucAGaAACGCCa -3'
miRNA:   3'- aaUUAUaGUUCUGCCCU--UCgUUGUGG- -5'
12739 5' -45.3 NC_003356.1 + 31447 0.74 0.761691
Target:  5'- ----aGUCgGAGACGGGAAGCAcCuCCg -3'
miRNA:   3'- aauuaUAG-UUCUGCCCUUCGUuGuGG- -5'
12739 5' -45.3 NC_003356.1 + 514 0.82 0.362585
Target:  5'- -aAAUGaCAAGACuGGGuAAGCAGCACCa -3'
miRNA:   3'- aaUUAUaGUUCUG-CCC-UUCGUUGUGG- -5'
12739 5' -45.3 NC_003356.1 + 36878 1.13 0.004515
Target:  5'- gUUAAUAUCAAGACGGGAAGCAACACCa -3'
miRNA:   3'- -AAUUAUAGUUCUGCCCUUCGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.