miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1274 5' -54.3 NC_001317.1 + 7034 0.66 0.604281
Target:  5'- uCGGCCAGuugcuuaaacccGGC-GGC-AGUCUGGCGCa -3'
miRNA:   3'- uGUUGGUC------------UUGcCCGuUCGGACUGCG- -5'
1274 5' -54.3 NC_001317.1 + 19935 0.66 0.604281
Target:  5'- gACGGCCAGc---GGCAAGCCcGuccCGCa -3'
miRNA:   3'- -UGUUGGUCuugcCCGUUCGGaCu--GCG- -5'
1274 5' -54.3 NC_001317.1 + 10656 0.66 0.592711
Target:  5'- aGCAucACCAGucucaaagcuGAUGGauGUAAGCCUGAuaCGCg -3'
miRNA:   3'- -UGU--UGGUC----------UUGCC--CGUUCGGACU--GCG- -5'
1274 5' -54.3 NC_001317.1 + 9374 0.66 0.581178
Target:  5'- cCAGCCGGuACGGaGCAagaaaGGCCgcauuaaGCGCg -3'
miRNA:   3'- uGUUGGUCuUGCC-CGU-----UCGGac-----UGCG- -5'
1274 5' -54.3 NC_001317.1 + 9911 0.66 0.569692
Target:  5'- aACGACCGGcGCGGGUGgucagccaguucAGCCaUGuCGUc -3'
miRNA:   3'- -UGUUGGUCuUGCCCGU------------UCGG-ACuGCG- -5'
1274 5' -54.3 NC_001317.1 + 9929 0.66 0.569692
Target:  5'- gGCAAUCGGu---GGCGAGCUUGAuacCGCu -3'
miRNA:   3'- -UGUUGGUCuugcCCGUUCGGACU---GCG- -5'
1274 5' -54.3 NC_001317.1 + 20445 0.66 0.558263
Target:  5'- aGCGGCUucacGACGGGCuuaGAGCUUGAgGUu -3'
miRNA:   3'- -UGUUGGuc--UUGCCCG---UUCGGACUgCG- -5'
1274 5' -54.3 NC_001317.1 + 9549 0.67 0.513289
Target:  5'- aACAGCCGGGAUGuGCAGuaCgaGGCGCg -3'
miRNA:   3'- -UGUUGGUCUUGCcCGUUcgGa-CUGCG- -5'
1274 5' -54.3 NC_001317.1 + 25274 0.67 0.513289
Target:  5'- uAUAugCAGAGuauCGcGGCGAGCCagGGCGa -3'
miRNA:   3'- -UGUugGUCUU---GC-CCGUUCGGa-CUGCg -5'
1274 5' -54.3 NC_001317.1 + 20314 0.68 0.480555
Target:  5'- uUAGCCuGAGCGGcacGCAucGCCUG-CGCc -3'
miRNA:   3'- uGUUGGuCUUGCC---CGUu-CGGACuGCG- -5'
1274 5' -54.3 NC_001317.1 + 17689 0.68 0.46987
Target:  5'- aACAACCu---CGGGaCAAGCCa-GCGCg -3'
miRNA:   3'- -UGUUGGucuuGCCC-GUUCGGacUGCG- -5'
1274 5' -54.3 NC_001317.1 + 12484 0.68 0.468809
Target:  5'- -aAGCCAGAACuugccgaGGGCucAGGCCguGCGCa -3'
miRNA:   3'- ugUUGGUCUUG-------CCCG--UUCGGacUGCG- -5'
1274 5' -54.3 NC_001317.1 + 27728 0.7 0.343575
Target:  5'- aACAGCaaauGGAACGGuGCAAGCCcGucagacACGCa -3'
miRNA:   3'- -UGUUGg---UCUUGCC-CGUUCGGaC------UGCG- -5'
1274 5' -54.3 NC_001317.1 + 2145 0.7 0.338368
Target:  5'- cAUGACCAGcAGCGGGCGcagcgccaccuacgaGGCCaGcCGCa -3'
miRNA:   3'- -UGUUGGUC-UUGCCCGU---------------UCGGaCuGCG- -5'
1274 5' -54.3 NC_001317.1 + 2417 0.7 0.334929
Target:  5'- uGCcACCAGAaaccaccgGCGGcGCGAGCaC-GACGCa -3'
miRNA:   3'- -UGuUGGUCU--------UGCC-CGUUCG-GaCUGCG- -5'
1274 5' -54.3 NC_001317.1 + 9278 0.7 0.334929
Target:  5'- gGCAAUCAGAccgGCGaGGCGcuCCUGcaGCGCg -3'
miRNA:   3'- -UGUUGGUCU---UGC-CCGUucGGAC--UGCG- -5'
1274 5' -54.3 NC_001317.1 + 6505 0.75 0.164262
Target:  5'- aGCGACUGGAACGGGCAuugaAGCCaaaGACa- -3'
miRNA:   3'- -UGUUGGUCUUGCCCGU----UCGGa--CUGcg -5'
1274 5' -54.3 NC_001317.1 + 30555 1.12 0.000314
Target:  5'- cACAACCAGAACGGGCAAGCCUGACGCa -3'
miRNA:   3'- -UGUUGGUCUUGCCCGUUCGGACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.