miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12745 3' -56.2 NC_003356.1 + 21631 1.08 0.000538
Target:  5'- aAAGCGCAUGGCGGAACAGACGCAGACa -3'
miRNA:   3'- -UUCGCGUACCGCCUUGUCUGCGUCUG- -5'
12745 3' -56.2 NC_003356.1 + 5716 0.66 0.537131
Target:  5'- cGAGCaGCAUGGCGaGuucGGCGGuuguuaagcCGCAGGCu -3'
miRNA:   3'- -UUCG-CGUACCGC-C---UUGUCu--------GCGUCUG- -5'
12745 3' -56.2 NC_003356.1 + 13648 0.66 0.515247
Target:  5'- cAGCGCucaG-GGAACuGAUGCAGGCa -3'
miRNA:   3'- uUCGCGuacCgCCUUGuCUGCGUCUG- -5'
12745 3' -56.2 NC_003356.1 + 31711 0.66 0.50444
Target:  5'- uGGGCGCAgcgGGUgccGGAACcgcaguacuggGGGCGCuGGCg -3'
miRNA:   3'- -UUCGCGUa--CCG---CCUUG-----------UCUGCGuCUG- -5'
12745 3' -56.2 NC_003356.1 + 36784 0.67 0.462264
Target:  5'- gAAGCGC-UGGCGuGGAUGGugGaGGAUg -3'
miRNA:   3'- -UUCGCGuACCGC-CUUGUCugCgUCUG- -5'
12745 3' -56.2 NC_003356.1 + 41876 0.67 0.462264
Target:  5'- uGAG-GCAUGGCGuacaGAACAGgaaGCGCAGcCg -3'
miRNA:   3'- -UUCgCGUACCGC----CUUGUC---UGCGUCuG- -5'
12745 3' -56.2 NC_003356.1 + 38432 0.68 0.431882
Target:  5'- uGGCGUGUgacguugccGGUGGAugccggugcuCAGugGCAGACa -3'
miRNA:   3'- uUCGCGUA---------CCGCCUu---------GUCugCGUCUG- -5'
12745 3' -56.2 NC_003356.1 + 34694 0.68 0.393252
Target:  5'- cAGGCGUAcGGCGGAugACAGGCuguuuuuucaGCuGACg -3'
miRNA:   3'- -UUCGCGUaCCGCCU--UGUCUG----------CGuCUG- -5'
12745 3' -56.2 NC_003356.1 + 41176 0.7 0.291606
Target:  5'- gAAGCGCGUcGGUGGAuaacguuucauGguGAUGCAGAa -3'
miRNA:   3'- -UUCGCGUA-CCGCCU-----------UguCUGCGUCUg -5'
12745 3' -56.2 NC_003356.1 + 40497 0.72 0.229723
Target:  5'- uGGCGCA-GGCGcAGCAGAgCGCGGAa -3'
miRNA:   3'- uUCGCGUaCCGCcUUGUCU-GCGUCUg -5'
12745 3' -56.2 NC_003356.1 + 25120 0.72 0.229723
Target:  5'- -uGUGCaAUGGCacacGGAACAGACGaCAGAUu -3'
miRNA:   3'- uuCGCG-UACCG----CCUUGUCUGC-GUCUG- -5'
12745 3' -56.2 NC_003356.1 + 19544 0.67 0.472639
Target:  5'- --cCGCA-GGCGGGagaACAGAC-CGGACa -3'
miRNA:   3'- uucGCGUaCCGCCU---UGUCUGcGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.