miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12746 3' -60.4 NC_003356.1 + 24270 1.08 0.000229
Target:  5'- uGACCACGCCAGCAGAGCUGGCGGAGGc -3'
miRNA:   3'- -CUGGUGCGGUCGUCUCGACCGCCUCC- -5'
12746 3' -60.4 NC_003356.1 + 24191 0.66 0.388682
Target:  5'- cGACCGuacaCGGCAGucuGUcGGCGGAGGu -3'
miRNA:   3'- -CUGGUgcg-GUCGUCu--CGaCCGCCUCC- -5'
12746 3' -60.4 NC_003356.1 + 9591 0.66 0.387792
Target:  5'- cGCgCACGCCAgaauuauGguGGGCUgGGCaGGGGa -3'
miRNA:   3'- cUG-GUGCGGU-------CguCUCGA-CCGcCUCC- -5'
12746 3' -60.4 NC_003356.1 + 19687 0.66 0.379839
Target:  5'- cGCC-CGUUAGCAacGGGCUGGCuGGAa- -3'
miRNA:   3'- cUGGuGCGGUCGU--CUCGACCG-CCUcc -5'
12746 3' -60.4 NC_003356.1 + 16222 0.66 0.379839
Target:  5'- gGACCAgUGCCuugcGCAGuuCUGGCGGGu- -3'
miRNA:   3'- -CUGGU-GCGGu---CGUCucGACCGCCUcc -5'
12746 3' -60.4 NC_003356.1 + 35738 0.68 0.273393
Target:  5'- gGGCUGCGCUuacccgugAGacaacauauacgguuCAGGGCUGGCGGcAGGg -3'
miRNA:   3'- -CUGGUGCGG--------UC---------------GUCUCGACCGCC-UCC- -5'
12746 3' -60.4 NC_003356.1 + 41346 0.71 0.173669
Target:  5'- cGACCAUGCUuuuGGUAGGuCUGGCGGAc- -3'
miRNA:   3'- -CUGGUGCGG---UCGUCUcGACCGCCUcc -5'
12746 3' -60.4 NC_003356.1 + 25461 0.66 0.345837
Target:  5'- -gUCAuCGCCAGCAGAGggaCUGGUGGu-- -3'
miRNA:   3'- cuGGU-GCGGUCGUCUC---GACCGCCucc -5'
12746 3' -60.4 NC_003356.1 + 24340 0.66 0.35413
Target:  5'- aGCCucCGCCAGCucuGCUGGCGu-GGu -3'
miRNA:   3'- cUGGu-GCGGUCGucuCGACCGCcuCC- -5'
12746 3' -60.4 NC_003356.1 + 22734 0.66 0.365973
Target:  5'- aGACCaACGCCAGCAGAcauuGCUGauuucccguuuuuaCGGGGu -3'
miRNA:   3'- -CUGG-UGCGGUCGUCU----CGACc-------------GCCUCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.