miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12746 5' -47.4 NC_003356.1 + 24306 1.14 0.002401
Target:  5'- uGUCAUACGACACCUAUACCGGAAAGCg -3'
miRNA:   3'- -CAGUAUGCUGUGGAUAUGGCCUUUCG- -5'
12746 5' -47.4 NC_003356.1 + 37683 0.71 0.823593
Target:  5'- aGUCAgggACcacauccuuccucuGGCACCUGuUGCCGG-AAGCg -3'
miRNA:   3'- -CAGUa--UG--------------CUGUGGAU-AUGGCCuUUCG- -5'
12746 5' -47.4 NC_003356.1 + 34250 0.7 0.879691
Target:  5'- -gCAUACguugcagGAUACCUGgcggGCCGGAAccaGGCu -3'
miRNA:   3'- caGUAUG-------CUGUGGAUa---UGGCCUU---UCG- -5'
12746 5' -47.4 NC_003356.1 + 28543 0.68 0.923965
Target:  5'- aGUUAUuacGCGGgGCCa--GCCGGAAAGUc -3'
miRNA:   3'- -CAGUA---UGCUgUGGauaUGGCCUUUCG- -5'
12746 5' -47.4 NC_003356.1 + 41138 0.66 0.967974
Target:  5'- -aCAUACGAUACggaauugaCUcUGCCGGuauuGAAGCa -3'
miRNA:   3'- caGUAUGCUGUG--------GAuAUGGCC----UUUCG- -5'
12746 5' -47.4 NC_003356.1 + 28675 0.66 0.967974
Target:  5'- aGUUuaagGCGAUcCCUgAUGCCGGAAAacuGCg -3'
miRNA:   3'- -CAGua--UGCUGuGGA-UAUGGCCUUU---CG- -5'
12746 5' -47.4 NC_003356.1 + 30389 0.66 0.967974
Target:  5'- uGUCAUgAUGAaucgcuUACCUuucgGUGCCGG-AAGCa -3'
miRNA:   3'- -CAGUA-UGCU------GUGGA----UAUGGCCuUUCG- -5'
12746 5' -47.4 NC_003356.1 + 22249 0.66 0.97138
Target:  5'- aGUCGgcagcggcuUAUGACGCCgaaGCaGGGGAGCg -3'
miRNA:   3'- -CAGU---------AUGCUGUGGauaUGgCCUUUCG- -5'
12746 5' -47.4 NC_003356.1 + 28853 0.66 0.974517
Target:  5'- ---cUAUGACGCCguucaugAUGuCCGGAGAGa -3'
miRNA:   3'- caguAUGCUGUGGa------UAU-GGCCUUUCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.