miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12748 3' -48 NC_003356.1 + 6193 0.66 0.94005
Target:  5'- gAAAUGGAcaaugauuGCGAAAuaguAGGUGUUGUa -3'
miRNA:   3'- -UUUACCU--------CGCUUUuuu-UCCGCGACGg -5'
12748 3' -48 NC_003356.1 + 6958 0.66 0.944882
Target:  5'- aAAGUGGAaaaCGAGAGguguuccAGAGGCGUagcuauucucUGCCa -3'
miRNA:   3'- -UUUACCUc--GCUUUU-------UUUCCGCG----------ACGG- -5'
12748 3' -48 NC_003356.1 + 10619 0.69 0.83148
Target:  5'- ---cGGAGCGGGAu-AAGGuCGCUGa- -3'
miRNA:   3'- uuuaCCUCGCUUUuuUUCC-GCGACgg -5'
12748 3' -48 NC_003356.1 + 11198 0.67 0.928361
Target:  5'- ---gGGAGCGGcu----GGCuGUUGCCa -3'
miRNA:   3'- uuuaCCUCGCUuuuuuuCCG-CGACGG- -5'
12748 3' -48 NC_003356.1 + 12147 0.67 0.928361
Target:  5'- -uAUGGcguaaCGAugaccuGGAAGGCGCUGUCa -3'
miRNA:   3'- uuUACCuc---GCUuu----UUUUCCGCGACGG- -5'
12748 3' -48 NC_003356.1 + 23363 0.67 0.915354
Target:  5'- --cUGGAGCGuuuuGAGGGGCauacCUGCa -3'
miRNA:   3'- uuuACCUCGCuuu-UUUUCCGc---GACGg -5'
12748 3' -48 NC_003356.1 + 25591 1.11 0.00249
Target:  5'- gAAAUGGAGCGAAAAAAAGGCGCUGCCu -3'
miRNA:   3'- -UUUACCUCGCUUUUUUUCCGCGACGG- -5'
12748 3' -48 NC_003356.1 + 26382 0.66 0.93437
Target:  5'- ---aGGGGCGuGAAGAuGGC-CUGCg -3'
miRNA:   3'- uuuaCCUCGCuUUUUUuCCGcGACGg -5'
12748 3' -48 NC_003356.1 + 26408 0.8 0.2701
Target:  5'- --cUGGAGCGu----AAGGCGCUGCa -3'
miRNA:   3'- uuuACCUCGCuuuuuUUCCGCGACGg -5'
12748 3' -48 NC_003356.1 + 27850 0.68 0.877165
Target:  5'- aAGGUGGcucAGCc------AGGCGCUGCCg -3'
miRNA:   3'- -UUUACC---UCGcuuuuuuUCCGCGACGG- -5'
12748 3' -48 NC_003356.1 + 36794 0.66 0.945402
Target:  5'- -cGUGGAugGUGGAGGAu-GGUGUUGCUu -3'
miRNA:   3'- uuUACCU--CGCUUUUUuuCCGCGACGG- -5'
12748 3' -48 NC_003356.1 + 37841 0.7 0.811375
Target:  5'- gGGAUGGuGUGccGGAAGGGCGCaUGUa -3'
miRNA:   3'- -UUUACCuCGCuuUUUUUCCGCG-ACGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.