miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1275 3' -48.9 NC_001317.1 + 19229 0.68 0.755696
Target:  5'- ---cGCCGUcGCUGAaaaACUCGGCGu -3'
miRNA:   3'- uaaaCGGCAaUGACUacgUGAGCUGU- -5'
1275 3' -48.9 NC_001317.1 + 1830 0.68 0.777104
Target:  5'- ---aGCCGUgaggcgcUGCUcGAUGCGCU-GACAa -3'
miRNA:   3'- uaaaCGGCA-------AUGA-CUACGUGAgCUGU- -5'
1275 3' -48.9 NC_001317.1 + 9558 0.69 0.68492
Target:  5'- ---gGCCG-UACUGAUGCACccgCGcCAu -3'
miRNA:   3'- uaaaCGGCaAUGACUACGUGa--GCuGU- -5'
1275 3' -48.9 NC_001317.1 + 1072 1.07 0.002408
Target:  5'- cAUUUGCCGUUACUGAUGCACUCGACAu -3'
miRNA:   3'- -UAAACGGCAAUGACUACGUGAGCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.