miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12754 3' -52.1 NC_003356.1 + 27034 0.66 0.817757
Target:  5'- --gGCuGCUguuguucaucaUGAACUUcgCGCCGCuGCg -3'
miRNA:   3'- uaaUG-CGG-----------ACUUGAAuaGCGGCGcCG- -5'
12754 3' -52.1 NC_003356.1 + 25237 0.66 0.78762
Target:  5'- --aAUGCCgGAGCaUUGUUGC-GUGGCg -3'
miRNA:   3'- uaaUGCGGaCUUG-AAUAGCGgCGCCG- -5'
12754 3' -52.1 NC_003356.1 + 23312 0.66 0.766618
Target:  5'- -aUACGCCcacuuuucgUGggUUguuaAUUGCCGCGcGCu -3'
miRNA:   3'- uaAUGCGG---------ACuuGAa---UAGCGGCGC-CG- -5'
12754 3' -52.1 NC_003356.1 + 19335 0.66 0.766618
Target:  5'- --cACGCCa-GGCUgaaagCGCCuGCGGCa -3'
miRNA:   3'- uaaUGCGGacUUGAaua--GCGG-CGCCG- -5'
12754 3' -52.1 NC_003356.1 + 13261 0.67 0.711678
Target:  5'- uAUUGgGCCUGGACUccaCaCCGCGGg -3'
miRNA:   3'- -UAAUgCGGACUUGAauaGcGGCGCCg -5'
12754 3' -52.1 NC_003356.1 + 41931 0.67 0.709424
Target:  5'- -gUACGCCaUGccucaauuucccGCUUuuuggcauccuUCGCCGCGGCg -3'
miRNA:   3'- uaAUGCGG-ACu-----------UGAAu----------AGCGGCGCCG- -5'
12754 3' -52.1 NC_003356.1 + 19135 0.72 0.462797
Target:  5'- -gUAUGUCUGAACccUUGUCcgguuccggcacgGCUGCGGCg -3'
miRNA:   3'- uaAUGCGGACUUG--AAUAG-------------CGGCGCCG- -5'
12754 3' -52.1 NC_003356.1 + 29951 0.75 0.297501
Target:  5'- --cGCGCCUGAuCUUAcCGCCGCuguugcugcuaugGGCg -3'
miRNA:   3'- uaaUGCGGACUuGAAUaGCGGCG-------------CCG- -5'
12754 3' -52.1 NC_003356.1 + 34743 0.8 0.153573
Target:  5'- -gUACGCCUGAGCUccuguucaAUCGCCGCGuuaaGCg -3'
miRNA:   3'- uaAUGCGGACUUGAa-------UAGCGGCGC----CG- -5'
12754 3' -52.1 NC_003356.1 + 41825 1.11 0.000998
Target:  5'- cAUUACGCCUGAACUUAUCGCCGCGGCg -3'
miRNA:   3'- -UAAUGCGGACUUGAAUAGCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.