miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1276 5' -51.8 NC_001317.1 + 8900 0.66 0.745523
Target:  5'- --aCGACAGCGAGcucGCCAGUCGgGa -3'
miRNA:   3'- gacGUUGUCGCUUuc-UGGUCAGCgUc -5'
1276 5' -51.8 NC_001317.1 + 3796 0.66 0.72281
Target:  5'- uUGUGugGGCGGuuGuCCAGUCGUc- -3'
miRNA:   3'- gACGUugUCGCUuuCuGGUCAGCGuc -5'
1276 5' -51.8 NC_001317.1 + 9686 0.66 0.711289
Target:  5'- -gGC-GCGGCuAAAGACCAGagGCAu -3'
miRNA:   3'- gaCGuUGUCGcUUUCUGGUCagCGUc -5'
1276 5' -51.8 NC_001317.1 + 19808 0.66 0.711289
Target:  5'- -cGguACcGCauaucGACCAGUCGCAGg -3'
miRNA:   3'- gaCguUGuCGcuuu-CUGGUCAGCGUC- -5'
1276 5' -51.8 NC_001317.1 + 2276 0.66 0.699678
Target:  5'- aCUGgAACAcGcCGAggccGAGGCCGGUUGCGu -3'
miRNA:   3'- -GACgUUGU-C-GCU----UUCUGGUCAGCGUc -5'
1276 5' -51.8 NC_001317.1 + 2135 0.66 0.699678
Target:  5'- -aGCGggcGCAGCGccaccuacGAGGCCAGcCGCAc -3'
miRNA:   3'- gaCGU---UGUCGCu-------UUCUGGUCaGCGUc -5'
1276 5' -51.8 NC_001317.1 + 26863 0.67 0.664441
Target:  5'- aUGCAGCAaagccGCGAAcauaCGGUCGCGGc -3'
miRNA:   3'- gACGUUGU-----CGCUUucugGUCAGCGUC- -5'
1276 5' -51.8 NC_001317.1 + 11151 0.67 0.652608
Target:  5'- -gGCcGCAGUGcugacGGGCguGUCGCAGa -3'
miRNA:   3'- gaCGuUGUCGCuu---UCUGguCAGCGUC- -5'
1276 5' -51.8 NC_001317.1 + 3658 0.67 0.652608
Target:  5'- cCUGCcaguaaAGCAGCGAu--GCCugucGUCGCGGg -3'
miRNA:   3'- -GACG------UUGUCGCUuucUGGu---CAGCGUC- -5'
1276 5' -51.8 NC_001317.1 + 3274 0.68 0.581581
Target:  5'- aCUGCAACugguacuCGAAAGACUGGUCGa-- -3'
miRNA:   3'- -GACGUUGuc-----GCUUUCUGGUCAGCguc -5'
1276 5' -51.8 NC_001317.1 + 1233 1.08 0.001063
Target:  5'- gCUGCAACAGCGAAAGACCAGUCGCAGc -3'
miRNA:   3'- -GACGUUGUCGCUUUCUGGUCAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.