miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1277 3' -54.1 NC_001317.1 + 27924 0.66 0.575259
Target:  5'- cAUGaACAUaaGCauaUGCCAGUGCGGCGu -3'
miRNA:   3'- cUAUcUGUAa-UGg--GCGGUCACGCCGC- -5'
1277 3' -54.1 NC_001317.1 + 11205 0.67 0.51855
Target:  5'- ---cGACAc-GCCCGUCAGcacUGCGGCc -3'
miRNA:   3'- cuauCUGUaaUGGGCGGUC---ACGCCGc -5'
1277 3' -54.1 NC_001317.1 + 6647 0.68 0.463131
Target:  5'- uGGUGGACGcccgcgcUUugCUGCCGGUuugGUGGCa -3'
miRNA:   3'- -CUAUCUGU-------AAugGGCGGUCA---CGCCGc -5'
1277 3' -54.1 NC_001317.1 + 17491 0.69 0.422922
Target:  5'- ---cGGCAUuuuUugCCaCCGGUGCGGCa -3'
miRNA:   3'- cuauCUGUA---AugGGcGGUCACGCCGc -5'
1277 3' -54.1 NC_001317.1 + 15 0.69 0.412953
Target:  5'- ----aGCAUUGCgCGCCAGagGUGGCGc -3'
miRNA:   3'- cuaucUGUAAUGgGCGGUCa-CGCCGC- -5'
1277 3' -54.1 NC_001317.1 + 7615 0.71 0.305344
Target:  5'- ---uGACAUgucacUGCCCGCCGuGUGCGGg- -3'
miRNA:   3'- cuauCUGUA-----AUGGGCGGU-CACGCCgc -5'
1277 3' -54.1 NC_001317.1 + 18740 0.73 0.220585
Target:  5'- --aAGAgCGU--CCCGCCGGUGCGGUa -3'
miRNA:   3'- cuaUCU-GUAauGGGCGGUCACGCCGc -5'
1277 3' -54.1 NC_001317.1 + 1575 1.08 0.000649
Target:  5'- aGAUAGACAUUACCCGCCAGUGCGGCGc -3'
miRNA:   3'- -CUAUCUGUAAUGGGCGGUCACGCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.