miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1277 5' -51.5 NC_001317.1 + 5523 0.66 0.765955
Target:  5'- aUCGuuGGCcguAAGCUGcUGGCCGaCAa -3'
miRNA:   3'- gAGCggCUGu--UUCGACuAUUGGC-GUg -5'
1277 5' -51.5 NC_001317.1 + 354 0.66 0.765955
Target:  5'- gCUUGCCGcCcauGAGCUGG-AACgGUACg -3'
miRNA:   3'- -GAGCGGCuGu--UUCGACUaUUGgCGUG- -5'
1277 5' -51.5 NC_001317.1 + 4922 0.66 0.743712
Target:  5'- --aGCCGuccgucacGCAAAcGCUGAUGaacACCGUGCa -3'
miRNA:   3'- gagCGGC--------UGUUU-CGACUAU---UGGCGUG- -5'
1277 5' -51.5 NC_001317.1 + 3643 0.66 0.709399
Target:  5'- -cCGaCCGuGCAGAGCUGGaAACaGCGCg -3'
miRNA:   3'- gaGC-GGC-UGUUUCGACUaUUGgCGUG- -5'
1277 5' -51.5 NC_001317.1 + 20004 0.67 0.697766
Target:  5'- aUUGCCGACcguGGGGCUuacaccggcGUAACCGCAa -3'
miRNA:   3'- gAGCGGCUG---UUUCGAc--------UAUUGGCGUg -5'
1277 5' -51.5 NC_001317.1 + 26452 0.67 0.662477
Target:  5'- gCUCGCUGGcCGGAGgaGAUug-CGCGCg -3'
miRNA:   3'- -GAGCGGCU-GUUUCgaCUAuugGCGUG- -5'
1277 5' -51.5 NC_001317.1 + 5666 0.67 0.65063
Target:  5'- gUUGCCGAUgcgcuucuGGCUGAUGaugauauccGCCGCGa -3'
miRNA:   3'- gAGCGGCUGuu------UCGACUAU---------UGGCGUg -5'
1277 5' -51.5 NC_001317.1 + 27526 0.68 0.615021
Target:  5'- uCUCGaaGACGAAGaaGGcAACCGCAUc -3'
miRNA:   3'- -GAGCggCUGUUUCgaCUaUUGGCGUG- -5'
1277 5' -51.5 NC_001317.1 + 2742 0.68 0.615021
Target:  5'- aUCGUCG-CAGAGCUGGccACCggcgaGCGCg -3'
miRNA:   3'- gAGCGGCuGUUUCGACUauUGG-----CGUG- -5'
1277 5' -51.5 NC_001317.1 + 16154 0.68 0.603171
Target:  5'- -cCGCCGcCAGA-CUGAc-GCCGCGCa -3'
miRNA:   3'- gaGCGGCuGUUUcGACUauUGGCGUG- -5'
1277 5' -51.5 NC_001317.1 + 15440 0.69 0.556165
Target:  5'- -aCGCUGcCGAAGCUGAc--CCGCAa -3'
miRNA:   3'- gaGCGGCuGUUUCGACUauuGGCGUg -5'
1277 5' -51.5 NC_001317.1 + 15593 0.7 0.521612
Target:  5'- -gCGCCGG--GGGCUGAU-GCCGUGCc -3'
miRNA:   3'- gaGCGGCUguUUCGACUAuUGGCGUG- -5'
1277 5' -51.5 NC_001317.1 + 4729 0.7 0.510277
Target:  5'- -cUGCUGACugacuGCUGAUAaACCGCAg -3'
miRNA:   3'- gaGCGGCUGuuu--CGACUAU-UGGCGUg -5'
1277 5' -51.5 NC_001317.1 + 15046 0.73 0.346852
Target:  5'- gCUgGCCGACAcaauGGCUGA--GgCGCACa -3'
miRNA:   3'- -GAgCGGCUGUu---UCGACUauUgGCGUG- -5'
1277 5' -51.5 NC_001317.1 + 27598 0.74 0.288094
Target:  5'- -aCGCCG-CuguGAGCUGAUGGCCcGCAUu -3'
miRNA:   3'- gaGCGGCuGu--UUCGACUAUUGG-CGUG- -5'
1277 5' -51.5 NC_001317.1 + 1612 1.09 0.000986
Target:  5'- cCUCGCCGACAAAGCUGAUAACCGCACc -3'
miRNA:   3'- -GAGCGGCUGUUUCGACUAUUGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.