miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 32595 0.66 0.35553
Target:  5'- uCGGUUUcgGUGUCGGUguuggUGCCGUCGGUg -3'
miRNA:   3'- cGUCGAG--CGCGGCCA-----GCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 44885 0.66 0.35553
Target:  5'- uCGGCgauuccgccugCGCGCCGGgCaCC-UCGGCCg -3'
miRNA:   3'- cGUCGa----------GCGCGGCCaGcGGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48432 0.66 0.35553
Target:  5'- cGCGGU--GCGCUGcUCGCCcG-CGGCCu -3'
miRNA:   3'- -CGUCGagCGCGGCcAGCGG-CaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6060 0.66 0.363597
Target:  5'- gGCAGguucgagCGCaccaugacgaccGCCGGggCGUCGUCGGCa -3'
miRNA:   3'- -CGUCga-----GCG------------CGGCCa-GCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 6132 0.66 0.363597
Target:  5'- aGCGGCUUgaggGCGCCacugugagGGUCGgCGUa-GCCg -3'
miRNA:   3'- -CGUCGAG----CGCGG--------CCAGCgGCAgcCGG- -5'
12771 3' -62.7 NC_003387.1 + 9725 0.66 0.363597
Target:  5'- uCAGCgcguaCGgGUCGG-CGUCaagGUCGGCCa -3'
miRNA:   3'- cGUCGa----GCgCGGCCaGCGG---CAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 33979 0.66 0.363597
Target:  5'- aGCuGC-CGCaGCgGGUCGCgGUCGacgacgagcuGCCu -3'
miRNA:   3'- -CGuCGaGCG-CGgCCAGCGgCAGC----------CGG- -5'
12771 3' -62.7 NC_003387.1 + 51894 0.66 0.363597
Target:  5'- uGUGGC-CGCGUacaGGcCGUCGUCGcGCUu -3'
miRNA:   3'- -CGUCGaGCGCGg--CCaGCGGCAGC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 2822 0.66 0.363597
Target:  5'- cGCAGCUCaGCGCacaaauCGGcUGCuCGcCGGCa -3'
miRNA:   3'- -CGUCGAG-CGCG------GCCaGCG-GCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 22155 0.66 0.363597
Target:  5'- cGCGGCacggCGCGuaCCGGcCGCgG-CGGCg -3'
miRNA:   3'- -CGUCGa---GCGC--GGCCaGCGgCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 51106 0.66 0.363597
Target:  5'- cCAGCaCGCGCCGaccgaaaUCGCCa--GGCCg -3'
miRNA:   3'- cGUCGaGCGCGGCc------AGCGGcagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1254 0.67 0.302644
Target:  5'- gGC-GUUCGCgguGUCGGUUGCgGUgCGGCUg -3'
miRNA:   3'- -CGuCGAGCG---CGGCCAGCGgCA-GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 4589 0.67 0.302644
Target:  5'- gGCGcGCUgCGCGCgGGUCuGCCacgugaUCGGCg -3'
miRNA:   3'- -CGU-CGA-GCGCGgCCAG-CGGc-----AGCCGg -5'
12771 3' -62.7 NC_003387.1 + 12201 0.67 0.302644
Target:  5'- gGCAGgUCGCuGCuCGGU-GCCG--GGCCa -3'
miRNA:   3'- -CGUCgAGCG-CG-GCCAgCGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 18008 0.67 0.302644
Target:  5'- cCAGCUCG-GCCaGGUCGCgccgcaUGUaccaGGCCc -3'
miRNA:   3'- cGUCGAGCgCGG-CCAGCG------GCAg---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 22687 0.67 0.302644
Target:  5'- gGCGGUgUCGaCGgCGG-CGCUGgCGGCCu -3'
miRNA:   3'- -CGUCG-AGC-GCgGCCaGCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 13763 0.67 0.309814
Target:  5'- aGCuAGCUacuCGCCGGcaauucgcgUCGCCGcagaucagCGGCCa -3'
miRNA:   3'- -CG-UCGAgc-GCGGCC---------AGCGGCa-------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 43329 0.67 0.309814
Target:  5'- uCGGCgaUCGUcuuGCCcgccucgggGGUCGCC-UCGGCCg -3'
miRNA:   3'- cGUCG--AGCG---CGG---------CCAGCGGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 47793 0.67 0.309814
Target:  5'- aCAGCUUGCGCgGGUCGaCC-UUGcCCu -3'
miRNA:   3'- cGUCGAGCGCGgCCAGC-GGcAGCcGG- -5'
12771 3' -62.7 NC_003387.1 + 7623 0.67 0.309814
Target:  5'- cGCGGCgUCGaCGaCCuGGcCGCCGaacacCGGCCc -3'
miRNA:   3'- -CGUCG-AGC-GC-GG-CCaGCGGCa----GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.