miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 26175 0.66 0.412731
Target:  5'- --gGCGUCAUGuCGUCGCGUGCuuGCCu- -3'
miRNA:   3'- uagCGCGGUGU-GCAGCGCGCG--UGGcu -5'
12773 3' -60.7 NC_003387.1 + 3741 0.66 0.412731
Target:  5'- gAUCGacgGCCGCAUGccCGCGUGCACg-- -3'
miRNA:   3'- -UAGCg--CGGUGUGCa-GCGCGCGUGgcu -5'
12773 3' -60.7 NC_003387.1 + 19991 0.66 0.403726
Target:  5'- aAUCGCcgagGCCAC-CG-CGcCGUGCGCCGu -3'
miRNA:   3'- -UAGCG----CGGUGuGCaGC-GCGCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 37293 0.66 0.403726
Target:  5'- -gCGCGCUcgucgGCGCgGUCGuCGacCGCGCCGAc -3'
miRNA:   3'- uaGCGCGG-----UGUG-CAGC-GC--GCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 23943 0.66 0.401049
Target:  5'- -gUGUGCCagucccaugcugcaGCACGU-GCGCaGCGCCGGg -3'
miRNA:   3'- uaGCGCGG--------------UGUGCAgCGCG-CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 9409 0.66 0.394846
Target:  5'- gAUCGCcgaggaguggGCCGacgagUACGaCGCGgGCGCCGAg -3'
miRNA:   3'- -UAGCG----------CGGU-----GUGCaGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 25527 0.66 0.394846
Target:  5'- cUUGCGCCGguUGCGcUCGCGC-CACCa- -3'
miRNA:   3'- uAGCGCGGU--GUGC-AGCGCGcGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 18760 0.66 0.394846
Target:  5'- -aUGCGCUuuGCGUCGCGUGUcgACUGc -3'
miRNA:   3'- uaGCGCGGugUGCAGCGCGCG--UGGCu -5'
12773 3' -60.7 NC_003387.1 + 37816 0.67 0.386094
Target:  5'- -gCGCaGCCGuCACGUCGUGCaGCAgcaggUCGAg -3'
miRNA:   3'- uaGCG-CGGU-GUGCAGCGCG-CGU-----GGCU- -5'
12773 3' -60.7 NC_003387.1 + 21751 0.67 0.386094
Target:  5'- --gGCGCUcgGCGUCaGCGC-CACCGAc -3'
miRNA:   3'- uagCGCGGugUGCAG-CGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 38432 0.67 0.37747
Target:  5'- -aUGCGCCGCuuuuuauaGUCGaCGCGCucgggcuuggcGCCGAu -3'
miRNA:   3'- uaGCGCGGUGug------CAGC-GCGCG-----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 26014 0.67 0.37747
Target:  5'- cUCGCGCCGCgcacgacgGCGUCGacgagcaGCGCGagcugcaCGAa -3'
miRNA:   3'- uAGCGCGGUG--------UGCAGCg------CGCGUg------GCU- -5'
12773 3' -60.7 NC_003387.1 + 17207 0.67 0.37747
Target:  5'- uGUCGCGCaACACGUCuGCGuCGgccCACCa- -3'
miRNA:   3'- -UAGCGCGgUGUGCAG-CGC-GC---GUGGcu -5'
12773 3' -60.7 NC_003387.1 + 19398 0.67 0.37747
Target:  5'- cGUUGUGCa--GCGUCGUGCGgGCCu- -3'
miRNA:   3'- -UAGCGCGgugUGCAGCGCGCgUGGcu -5'
12773 3' -60.7 NC_003387.1 + 16415 0.67 0.37747
Target:  5'- cAUCGCGUuCACAgaucCGUUGCGCGCcaugcguucuggACCGu -3'
miRNA:   3'- -UAGCGCG-GUGU----GCAGCGCGCG------------UGGCu -5'
12773 3' -60.7 NC_003387.1 + 3883 0.67 0.37747
Target:  5'- -gCGUGCaCGC-CGU-GCGuCGCGCCGAg -3'
miRNA:   3'- uaGCGCG-GUGuGCAgCGC-GCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 39546 0.67 0.37747
Target:  5'- gAUCGCGUCGgcCAgGUCGCGCucggccuucuGCACgCGGu -3'
miRNA:   3'- -UAGCGCGGU--GUgCAGCGCG----------CGUG-GCU- -5'
12773 3' -60.7 NC_003387.1 + 30907 0.67 0.368978
Target:  5'- cUUGCGCUcccaGCuccCGUCGgGCuGCACCGGc -3'
miRNA:   3'- uAGCGCGG----UGu--GCAGCgCG-CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18682 0.67 0.363945
Target:  5'- -cCGCcCCACACGccgaccaggugcgggUCGCGCaGCGCCa- -3'
miRNA:   3'- uaGCGcGGUGUGC---------------AGCGCG-CGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 21718 0.67 0.360617
Target:  5'- -cCGCGCCGacCugGUCGUGgaaauCGuCGCCGAg -3'
miRNA:   3'- uaGCGCGGU--GugCAGCGC-----GC-GUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.