miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 935 0.68 0.498571
Target:  5'- cUCGGGGCGaUCGACGCCcagccaccagucgGGCGggUa-- -3'
miRNA:   3'- -AGUCCUGC-AGCUGUGG-------------CCGCuuGggu -5'
12774 3' -57.4 NC_003387.1 + 1320 0.68 0.499587
Target:  5'- gCAGGcgcuCGcCGGuCACCGGCcGAAUCCGa -3'
miRNA:   3'- aGUCCu---GCaGCU-GUGGCCG-CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 10791 0.68 0.499587
Target:  5'- gUCGGGuCGUCGGCGUCGGCGGcACaCGg -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGCCGCU-UGgGU- -5'
12774 3' -57.4 NC_003387.1 + 3225 0.69 0.421625
Target:  5'- gCGacACGUCGACGCCgGGCGGGCgCAc -3'
miRNA:   3'- aGUccUGCAGCUGUGG-CCGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 51435 0.69 0.449066
Target:  5'- cCAGGGCGUCGAggcgcauCACCG-UGAACaCCu -3'
miRNA:   3'- aGUCCUGCAGCU-------GUGGCcGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 39290 0.69 0.450029
Target:  5'- gCAGGuuGcCGAgguaguucaCACCGGCGAGCgCCGa -3'
miRNA:   3'- aGUCCugCaGCU---------GUGGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 22670 0.69 0.444264
Target:  5'- gUCAGGGCGcgcucgugggcggugUCGACGgCGGCGcuggcGGCCUg -3'
miRNA:   3'- -AGUCCUGC---------------AGCUGUgGCCGC-----UUGGGu -5'
12774 3' -57.4 NC_003387.1 + 52078 0.69 0.4124
Target:  5'- uUCAucGGGCGUCGcugccGCGgCGGCGAcgcuGCCCu -3'
miRNA:   3'- -AGU--CCUGCAGC-----UGUgGCCGCU----UGGGu -5'
12774 3' -57.4 NC_003387.1 + 18935 0.69 0.4124
Target:  5'- aUCGGG-UGUCGGCACCaGCcGGGCCa- -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGcCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 31031 0.69 0.430974
Target:  5'- cCGGGGCGgcggccagcaCGGCACCGGCGccgauGGCaCCGg -3'
miRNA:   3'- aGUCCUGCa---------GCUGUGGCCGC-----UUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 45105 0.69 0.430974
Target:  5'- cCAGGuCGUCGACGCC-GCGGugUa- -3'
miRNA:   3'- aGUCCuGCAGCUGUGGcCGCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 10511 0.7 0.394328
Target:  5'- gCGGGGCGcUCGGC-UCGGCGAugCgGg -3'
miRNA:   3'- aGUCCUGC-AGCUGuGGCCGCUugGgU- -5'
12774 3' -57.4 NC_003387.1 + 6751 0.7 0.394328
Target:  5'- cCAGGcCacccUCGGCACCGGCGAgaaCCAg -3'
miRNA:   3'- aGUCCuGc---AGCUGUGGCCGCUug-GGU- -5'
12774 3' -57.4 NC_003387.1 + 23445 0.7 0.359761
Target:  5'- aCAGGGCGUCGAUGCgGGUu-GCCa- -3'
miRNA:   3'- aGUCCUGCAGCUGUGgCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 34117 0.7 0.385487
Target:  5'- aUCGGcGGCGUCGACGUCGcggugcGCGAACUCGa -3'
miRNA:   3'- -AGUC-CUGCAGCUGUGGC------CGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 11273 0.7 0.4033
Target:  5'- gUCAGGGCGgCGucagggccGCGCCGGUGAcCUCGg -3'
miRNA:   3'- -AGUCCUGCaGC--------UGUGGCCGCUuGGGU- -5'
12774 3' -57.4 NC_003387.1 + 1416 0.71 0.343288
Target:  5'- --cGGACGUCGGC-CCGaGCGAuCCUg -3'
miRNA:   3'- aguCCUGCAGCUGuGGC-CGCUuGGGu -5'
12774 3' -57.4 NC_003387.1 + 5145 0.71 0.319612
Target:  5'- -aGGGGCGcUCGGCGCCGGuCGGugCa- -3'
miRNA:   3'- agUCCUGC-AGCUGUGGCC-GCUugGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.