miRNA display CGI


Results 81 - 95 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 9263 0.72 0.289982
Target:  5'- aCAGGACGUCGcCGCCGGUcAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCuGUGGCCGcUUGggu -5'
12774 3' -57.4 NC_003387.1 + 25298 0.72 0.275994
Target:  5'- cCAGGgcgACGUCGGCG-CGGUGGugCCAg -3'
miRNA:   3'- aGUCC---UGCAGCUGUgGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 39203 0.73 0.25603
Target:  5'- cCAGGccgACGcugucagCGACuccACCGGCGAACCCGc -3'
miRNA:   3'- aGUCC---UGCa------GCUG---UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18935 0.69 0.4124
Target:  5'- aUCGGG-UGUCGGCACCaGCcGGGCCa- -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGcCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 52078 0.69 0.4124
Target:  5'- uUCAucGGGCGUCGcugccGCGgCGGCGAcgcuGCCCu -3'
miRNA:   3'- -AGU--CCUGCAGC-----UGUgGCCGCU----UGGGu -5'
12774 3' -57.4 NC_003387.1 + 935 0.68 0.498571
Target:  5'- cUCGGGGCGaUCGACGCCcagccaccagucgGGCGggUa-- -3'
miRNA:   3'- -AGUCCUGC-AGCUGUGG-------------CCGCuuGggu -5'
12774 3' -57.4 NC_003387.1 + 43156 0.68 0.489473
Target:  5'- aCAGGuGCG-CG-UGCUGGCGAAUCCAc -3'
miRNA:   3'- aGUCC-UGCaGCuGUGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 2792 0.68 0.479455
Target:  5'- cUCAGGGCGUuugcUGACuuuUCGGCGAcgcgcaGCUCAg -3'
miRNA:   3'- -AGUCCUGCA----GCUGu--GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 34817 0.68 0.47647
Target:  5'- gUCGGGGgcgucgagaauguuCGUCGACGgcCCGcGCGGGCCUu -3'
miRNA:   3'- -AGUCCU--------------GCAGCUGU--GGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 16061 0.68 0.459729
Target:  5'- cCAGGuCGgCGA-GCCGGUGAugCCAc -3'
miRNA:   3'- aGUCCuGCaGCUgUGGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 39290 0.69 0.450029
Target:  5'- gCAGGuuGcCGAgguaguucaCACCGGCGAGCgCCGa -3'
miRNA:   3'- aGUCCugCaGCU---------GUGGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 51435 0.69 0.449066
Target:  5'- cCAGGGCGUCGAggcgcauCACCG-UGAACaCCu -3'
miRNA:   3'- aGUCCUGCAGCU-------GUGGCcGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 22670 0.69 0.444264
Target:  5'- gUCAGGGCGcgcucgugggcggugUCGACGgCGGCGcuggcGGCCUg -3'
miRNA:   3'- -AGUCCUGC---------------AGCUGUgGCCGC-----UUGGGu -5'
12774 3' -57.4 NC_003387.1 + 3225 0.69 0.421625
Target:  5'- gCGacACGUCGACGCCgGGCGGGCgCAc -3'
miRNA:   3'- aGUccUGCAGCUGUGG-CCGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 51590 1.09 0.000724
Target:  5'- aUCAGGACGUCGACACCGGCGAACCCAc -3'
miRNA:   3'- -AGUCCUGCAGCUGUGGCCGCUUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.