miRNA display CGI


Results 81 - 95 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 46868 0.76 0.164428
Target:  5'- cCAGGACGguugCGGCGCCcccaccugcGGCGcAGCCCGg -3'
miRNA:   3'- aGUCCUGCa---GCUGUGG---------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 10511 0.7 0.394328
Target:  5'- gCGGGGCGcUCGGC-UCGGCGAugCgGg -3'
miRNA:   3'- aGUCCUGC-AGCUGuGGCCGCUugGgU- -5'
12774 3' -57.4 NC_003387.1 + 31031 0.69 0.430974
Target:  5'- cCGGGGCGgcggccagcaCGGCACCGGCGccgauGGCaCCGg -3'
miRNA:   3'- aGUCCUGCa---------GCUGUGGCCGC-----UUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 45105 0.69 0.430974
Target:  5'- cCAGGuCGUCGACGCC-GCGGugUa- -3'
miRNA:   3'- aGUCCuGCAGCUGUGGcCGCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 4410 0.67 0.520084
Target:  5'- gCAGaACGUCGACGCCgagcugGGCaaggcguucgccGAGCCCGc -3'
miRNA:   3'- aGUCcUGCAGCUGUGG------CCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 19439 0.68 0.509792
Target:  5'- aCAGGGCGUUaAgGCCGuGCGGGCgCGu -3'
miRNA:   3'- aGUCCUGCAGcUgUGGC-CGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 48878 0.68 0.499587
Target:  5'- --cGGAuCGUCGGCGCCGccuaccGCGcGCCCu -3'
miRNA:   3'- aguCCU-GCAGCUGUGGC------CGCuUGGGu -5'
12774 3' -57.4 NC_003387.1 + 22329 0.68 0.487461
Target:  5'- aUCAGGuaacucuccCGGCGCCGGUGGggcugGCCCAg -3'
miRNA:   3'- -AGUCCugca-----GCUGUGGCCGCU-----UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 17271 0.68 0.47647
Target:  5'- cCAGuucGACGaCGACcccgacagcuaacaGCCGGCGAAUCCGc -3'
miRNA:   3'- aGUC---CUGCaGCUG--------------UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 36892 0.68 0.459729
Target:  5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3'
miRNA:   3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5'
12774 3' -57.4 NC_003387.1 + 23860 0.68 0.459729
Target:  5'- gUCGGGGC--CGugGaCCGGCG-ACCCGg -3'
miRNA:   3'- -AGUCCUGcaGCugU-GGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18963 0.68 0.459729
Target:  5'- cUCGGuuuCGUCGGCAccCCGGCGAGCaUCGa -3'
miRNA:   3'- -AGUCcu-GCAGCUGU--GGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 9355 0.8 0.080383
Target:  5'- cCAGGACGUCGACgaGCCGGUGGcgGCCgAg -3'
miRNA:   3'- aGUCCUGCAGCUG--UGGCCGCU--UGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.