miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 5' -61 NC_003387.1 + 6892 0.67 0.402043
Target:  5'- cUCCGCgGCgucgUCGCGGGCcaucaGCC--GCGGGAc -3'
miRNA:   3'- -GGGCG-CG----AGCGCCCG-----UGGcuUGUCCU- -5'
12774 5' -61 NC_003387.1 + 44799 0.67 0.402043
Target:  5'- gCCCGCGCgauccUCGaCGGGCugACCGAcgucguguGGAu -3'
miRNA:   3'- -GGGCGCG-----AGC-GCCCG--UGGCUugu-----CCU- -5'
12774 5' -61 NC_003387.1 + 8983 0.67 0.401163
Target:  5'- gCCGCcaacacGCUCGCGGGCucccgcauGCCGccgucgagcaccuGGCGGGc -3'
miRNA:   3'- gGGCG------CGAGCGCCCG--------UGGC-------------UUGUCCu -5'
12774 5' -61 NC_003387.1 + 29062 0.67 0.393306
Target:  5'- gCCGCGUcauaaacugcgUCGC-GGCGCUGuGCAGGu -3'
miRNA:   3'- gGGCGCG-----------AGCGcCCGUGGCuUGUCCu -5'
12774 5' -61 NC_003387.1 + 12468 0.67 0.393306
Target:  5'- gCCUG-GC-CGCGGGCcuggcguCCGAGCAGa- -3'
miRNA:   3'- -GGGCgCGaGCGCCCGu------GGCUUGUCcu -5'
12774 5' -61 NC_003387.1 + 5340 0.67 0.393306
Target:  5'- cCCCGCGCUUGCGGuGUcgguguugaGCUGucAACAGu- -3'
miRNA:   3'- -GGGCGCGAGCGCC-CG---------UGGC--UUGUCcu -5'
12774 5' -61 NC_003387.1 + 47204 0.67 0.393306
Target:  5'- gCC-CGCUCGCGGGCgaGCCGcuGCucGAu -3'
miRNA:   3'- gGGcGCGAGCGCCCG--UGGCu-UGucCU- -5'
12774 5' -61 NC_003387.1 + 3572 0.67 0.38384
Target:  5'- -gCGCGCUgGUGuGCACCGAcacguguACAGGc -3'
miRNA:   3'- ggGCGCGAgCGCcCGUGGCU-------UGUCCu -5'
12774 5' -61 NC_003387.1 + 4400 0.67 0.379587
Target:  5'- aCUCGCGCUCGC--GCGCCGccucgauuucgucgaGGCGGGc -3'
miRNA:   3'- -GGGCGCGAGCGccCGUGGC---------------UUGUCCu -5'
12774 5' -61 NC_003387.1 + 22656 0.67 0.376208
Target:  5'- -gCGCauGCUCGCuGGCccugauaacgGCCGAGCGGGu -3'
miRNA:   3'- ggGCG--CGAGCGcCCG----------UGGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 42368 0.67 0.376208
Target:  5'- gCCGUGCggaucaugUGCGGGCugCGcAACGGc- -3'
miRNA:   3'- gGGCGCGa-------GCGCCCGugGC-UUGUCcu -5'
12774 5' -61 NC_003387.1 + 23813 0.67 0.376208
Target:  5'- gCCGCGCagcagauaCGUgaGGGCGCCGcgcCGGGAc -3'
miRNA:   3'- gGGCGCGa-------GCG--CCCGUGGCuu-GUCCU- -5'
12774 5' -61 NC_003387.1 + 40011 0.67 0.367848
Target:  5'- aCCUagaGCccCGCGGGCGCuCGcGCGGGAa -3'
miRNA:   3'- -GGGcg-CGa-GCGCCCGUG-GCuUGUCCU- -5'
12774 5' -61 NC_003387.1 + 46921 0.67 0.367848
Target:  5'- gCCGCacGCUUGagcCGGGCACCGAggugucgauccGCGGcGAg -3'
miRNA:   3'- gGGCG--CGAGC---GCCCGUGGCU-----------UGUC-CU- -5'
12774 5' -61 NC_003387.1 + 22146 0.67 0.359617
Target:  5'- aCCCGCaCUCGCGGcacggcgcGUACCGGccGCGGcGGc -3'
miRNA:   3'- -GGGCGcGAGCGCC--------CGUGGCU--UGUC-CU- -5'
12774 5' -61 NC_003387.1 + 32223 0.67 0.359617
Target:  5'- gCCGCGCUgCGCGaGCGCgaCGAGCuGGc -3'
miRNA:   3'- gGGCGCGA-GCGCcCGUG--GCUUGuCCu -5'
12774 5' -61 NC_003387.1 + 48140 0.68 0.354741
Target:  5'- aCCCGCGCgcagCGCGc-CACCGAggcccgcgcggucgcGCAGGc -3'
miRNA:   3'- -GGGCGCGa---GCGCccGUGGCU---------------UGUCCu -5'
12774 5' -61 NC_003387.1 + 27920 0.68 0.351516
Target:  5'- aCCgGCGg-CGUGGGCGCCu--CGGGGg -3'
miRNA:   3'- -GGgCGCgaGCGCCCGUGGcuuGUCCU- -5'
12774 5' -61 NC_003387.1 + 28886 0.68 0.351516
Target:  5'- aCUGCgGCggcuuaggCGCGGGCGCCGGGCc--- -3'
miRNA:   3'- gGGCG-CGa-------GCGCCCGUGGCUUGuccu -5'
12774 5' -61 NC_003387.1 + 26590 0.68 0.351516
Target:  5'- gCCGCGCgagcggCGaCGGacGCGCCGAccuggcGCAGGu -3'
miRNA:   3'- gGGCGCGa-----GC-GCC--CGUGGCU------UGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.