miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 35216 0.68 0.403676
Target:  5'- -aCCGccuCGUCGUCGAUcauuuccauaGUCGCggccaugCCGCCg -3'
miRNA:   3'- ugGGCu--GCAGCAGCUG----------CAGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3067 0.68 0.39585
Target:  5'- cGCuCCGACGUCGacccacUCGGgGccaaGCUCGCCg -3'
miRNA:   3'- -UG-GGCUGCAGC------AGCUgCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48031 0.68 0.362278
Target:  5'- uGCUCGACGagguucagcaccUCGUcuugcuuggCGGCGUCGgCCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCA---------GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14195 0.68 0.362278
Target:  5'- cACCaUGACGcCGUCGGCGcUCaCuuGCCg -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGC-AGcGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 11056 0.68 0.367186
Target:  5'- gACgCCGAaccacaggucgcaGUCGUCGACGUacCGCagCGCCu -3'
miRNA:   3'- -UG-GGCUg------------CAGCAGCUGCA--GCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 48153 0.68 0.370483
Target:  5'- gGCCuCGGCGagcagcUUGUCGGCcuugucguaGUCGCCCGUUu -3'
miRNA:   3'- -UGG-GCUGC------AGCAGCUG---------CAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51296 0.68 0.39585
Target:  5'- aGCCCuGCcagcUCGUCGGCGgcggCGCCuCGCa -3'
miRNA:   3'- -UGGGcUGc---AGCAGCUGCa---GCGG-GCGg -5'
12775 3' -60.3 NC_003387.1 + 18899 0.68 0.404551
Target:  5'- uGCUuaaaGACGcCGUCGGCGgcgCGCUCGaCCc -3'
miRNA:   3'- -UGGg---CUGCaGCAGCUGCa--GCGGGC-GG- -5'
12775 3' -60.3 NC_003387.1 + 31183 0.68 0.404551
Target:  5'- uGCCgGGCGgcaCGUCGaacGCGaCGCgCGCCu -3'
miRNA:   3'- -UGGgCUGCa--GCAGC---UGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48875 0.68 0.404551
Target:  5'- aGCCgGA--UCGUCGGCGcCGCCUaCCg -3'
miRNA:   3'- -UGGgCUgcAGCAGCUGCaGCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 49556 0.68 0.404551
Target:  5'- cCCCGAuuaCGgccUCGcCGAgGUgCGCCCGCUg -3'
miRNA:   3'- uGGGCU---GC---AGCaGCUgCA-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 27144 0.68 0.39585
Target:  5'- uGCCCGcCGggGUCGGCGcCGCCggggaacgugUGCCc -3'
miRNA:   3'- -UGGGCuGCagCAGCUGCaGCGG----------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 12610 0.68 0.39585
Target:  5'- uGCCCGACGcCGg-GcCGcCGCCUGCg -3'
miRNA:   3'- -UGGGCUGCaGCagCuGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 1447 0.68 0.39585
Target:  5'- gGCUCGGgGUCGUCGuccuCGUCGaggUCGUCg -3'
miRNA:   3'- -UGGGCUgCAGCAGCu---GCAGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 37396 0.68 0.38727
Target:  5'- aACUCGACGagccagUCGUCGccgcgcagcacaAUGUCGCCggUGCCg -3'
miRNA:   3'- -UGGGCUGC------AGCAGC------------UGCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 22679 0.68 0.378814
Target:  5'- cGCUCGugGgcggUGUCGACGgcggCGCUgGCg -3'
miRNA:   3'- -UGGGCugCa---GCAGCUGCa---GCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 4926 0.68 0.377976
Target:  5'- uGCCCGGCGcggCGUCGcGCGUUGUcgaacgugacagaCCaGCCg -3'
miRNA:   3'- -UGGGCUGCa--GCAGC-UGCAGCG-------------GG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 8123 0.69 0.315739
Target:  5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3'
miRNA:   3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 9998 0.69 0.315739
Target:  5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3'
miRNA:   3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 9024 0.69 0.322423
Target:  5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3'
miRNA:   3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.