Results 101 - 120 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 46341 | 0.69 | 0.346249 |
Target: 5'- cGCCC-ACG-Caa-GGCGUCGCCCGCg -3' miRNA: 3'- -UGGGcUGCaGcagCUGCAGCGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 22993 | 0.69 | 0.346249 |
Target: 5'- cGCCCGcguagcugcCGUCGUCGGCcuggGCgCCGCCg -3' miRNA: 3'- -UGGGCu--------GCAGCAGCUGcag-CG-GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 21532 | 0.69 | 0.338428 |
Target: 5'- gGCgCG-CGUCGcguUCGACGUgcCGCCCGgCa -3' miRNA: 3'- -UGgGCuGCAGC---AGCUGCA--GCGGGCgG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 8123 | 0.69 | 0.315739 |
Target: 5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3' miRNA: 3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 9998 | 0.69 | 0.315739 |
Target: 5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3' miRNA: 3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 6893 | 0.69 | 0.323172 |
Target: 5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3' miRNA: 3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 9338 | 0.69 | 0.346249 |
Target: 5'- -gUCGACGUCGUCGAgcaccaggaCGUCGaCgaGCCg -3' miRNA: 3'- ugGGCUGCAGCAGCU---------GCAGC-GggCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 478 | 0.69 | 0.346249 |
Target: 5'- -aCCGGCGcgagcugcUCGUCGcgauGCG-CGCCCGCg -3' miRNA: 3'- ugGGCUGC--------AGCAGC----UGCaGCGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 17546 | 0.69 | 0.323172 |
Target: 5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3' miRNA: 3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 10781 | 0.69 | 0.329973 |
Target: 5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3' miRNA: 3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 52256 | 0.69 | 0.330735 |
Target: 5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3' miRNA: 3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 14897 | 0.69 | 0.330735 |
Target: 5'- uGCCCGACcUCGcUCGGCccgaUCGCgCGCUg -3' miRNA: 3'- -UGGGCUGcAGC-AGCUGc---AGCGgGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 2846 | 0.69 | 0.323172 |
Target: 5'- gACgCCGACGacaugaUCGUCGGugagGUCGCcCCGCUg -3' miRNA: 3'- -UG-GGCUGC------AGCAGCUg---CAGCG-GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 30008 | 0.69 | 0.315739 |
Target: 5'- cGCCCGAC-UgGUCGGuaUCGCCCagGCCg -3' miRNA: 3'- -UGGGCUGcAgCAGCUgcAGCGGG--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 49184 | 0.69 | 0.315739 |
Target: 5'- cGCaggCGGCGgcCGUCGACGUUgcugaGCCCGCa -3' miRNA: 3'- -UGg--GCUGCa-GCAGCUGCAG-----CGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 43774 | 0.69 | 0.323172 |
Target: 5'- uACCagGACGacaccaGgacCGGCGUCGCCCGCUu -3' miRNA: 3'- -UGGg-CUGCag----Ca--GCUGCAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 43300 | 0.69 | 0.330735 |
Target: 5'- cGCCCGcgucguacuCGUCGgcccacuccUCGGCGaucgucUUGCCCGCCu -3' miRNA: 3'- -UGGGCu--------GCAGC---------AGCUGC------AGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 34550 | 0.69 | 0.335335 |
Target: 5'- -gCCGAuCGUCagcggGUCGACGUCGaacucgaugccaaCCGCCu -3' miRNA: 3'- ugGGCU-GCAG-----CAGCUGCAGCg------------GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24326 | 0.69 | 0.337652 |
Target: 5'- uGCUCGGCGaUCGUUuccuGCGUcagccacgaguugCGCCCGCCc -3' miRNA: 3'- -UGGGCUGC-AGCAGc---UGCA-------------GCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 7620 | 0.69 | 0.338428 |
Target: 5'- cACCgCGGCGUCGaCGACc-UGgCCGCCg -3' miRNA: 3'- -UGG-GCUGCAGCaGCUGcaGCgGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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