miRNA display CGI


Results 121 - 140 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 52256 0.69 0.330735
Target:  5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3'
miRNA:   3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17546 0.69 0.323172
Target:  5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3'
miRNA:   3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6893 0.69 0.323172
Target:  5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3'
miRNA:   3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5'
12775 3' -60.3 NC_003387.1 + 36662 0.69 0.322423
Target:  5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 31896 0.7 0.301262
Target:  5'- -gCCGACGUCGcgCGACGUauccCCUGCUc -3'
miRNA:   3'- ugGGCUGCAGCa-GCUGCAgc--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 50375 0.7 0.287303
Target:  5'- cGCUCGACGcCGaCGGCGgccUCGacaCCGCCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCUGC---AGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36604 0.7 0.294218
Target:  5'- aACCCGGCGU--UCGAC-UCGCggcugcuggCCGCCg -3'
miRNA:   3'- -UGGGCUGCAgcAGCUGcAGCG---------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 45036 0.7 0.278505
Target:  5'- aGCCCGGCGUgaacccgaacgggcCGagguuguaguccUCGACGUCGCCgUGCa -3'
miRNA:   3'- -UGGGCUGCA--------------GC------------AGCUGCAGCGG-GCGg -5'
12775 3' -60.3 NC_003387.1 + 3482 0.7 0.280516
Target:  5'- cCCCGGCGUCGagcaGcCGcUCGgCCGCCu -3'
miRNA:   3'- uGGGCUGCAGCag--CuGC-AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 20240 0.7 0.280516
Target:  5'- cACCaCGGCGcCGgggUCGACGcaaaCGCCCGCa -3'
miRNA:   3'- -UGG-GCUGCaGC---AGCUGCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 34117 0.7 0.287303
Target:  5'- -aUCGGCGgCGUCGACGUCGCggugCGCg -3'
miRNA:   3'- ugGGCUGCaGCAGCUGCAGCGg---GCGg -5'
12775 3' -60.3 NC_003387.1 + 41555 0.7 0.287303
Target:  5'- uGCUCGACcacaGUCGUC-ACGUUGCCCauaggcGCCu -3'
miRNA:   3'- -UGGGCUG----CAGCAGcUGCAGCGGG------CGG- -5'
12775 3' -60.3 NC_003387.1 + 42928 0.7 0.294218
Target:  5'- gACCCGuCGUCGaaaGCG-CGaCCCGCCa -3'
miRNA:   3'- -UGGGCuGCAGCagcUGCaGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44390 0.7 0.301262
Target:  5'- -gUCGGgGUCGUCGAgGUCGgCCggGCCg -3'
miRNA:   3'- ugGGCUgCAGCAGCUgCAGCgGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 16318 0.7 0.308436
Target:  5'- aGCUCGGCGccggUGUCGAUGUUGaCCGCg -3'
miRNA:   3'- -UGGGCUGCa---GCAGCUGCAGCgGGCGg -5'
12775 3' -60.3 NC_003387.1 + 38150 0.7 0.273857
Target:  5'- cGCuuGGCGUagaaCGgccaggCGGCGUCGaCCGCCa -3'
miRNA:   3'- -UGggCUGCA----GCa-----GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 39046 0.7 0.287303
Target:  5'- aACgCCGACauagCGUCGACGgCGCCCucggcgaccgaGCCg -3'
miRNA:   3'- -UG-GGCUGca--GCAGCUGCaGCGGG-----------CGG- -5'
12775 3' -60.3 NC_003387.1 + 51217 0.7 0.276506
Target:  5'- aGCCUGcACGUCGgccgcggccuggugcUCGACGUCGa-CGCCc -3'
miRNA:   3'- -UGGGC-UGCAGC---------------AGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 29384 0.7 0.280516
Target:  5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3'
miRNA:   3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18206 0.7 0.293521
Target:  5'- cGCCuCGGCGaCG-CGACGaccggcgaccuggUCGCCCGCg -3'
miRNA:   3'- -UGG-GCUGCaGCaGCUGC-------------AGCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.