miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 18146 0.69 0.353399
Target:  5'- cACCUcaaGGCGguuggcaUCGaguUCGACGUCGaCCCGCUg -3'
miRNA:   3'- -UGGG---CUGC-------AGC---AGCUGCAGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18604 0.69 0.353399
Target:  5'- cGCaCCG-CGaCGUCGACGcCGCcgaucugCCGCCg -3'
miRNA:   3'- -UG-GGCuGCaGCAGCUGCaGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 478 0.69 0.346249
Target:  5'- -aCCGGCGcgagcugcUCGUCGcgauGCG-CGCCCGCg -3'
miRNA:   3'- ugGGCUGC--------AGCAGC----UGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 43300 0.69 0.330735
Target:  5'- cGCCCGcgucguacuCGUCGgcccacuccUCGGCGaucgucUUGCCCGCCu -3'
miRNA:   3'- -UGGGCu--------GCAGC---------AGCUGC------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14897 0.69 0.330735
Target:  5'- uGCCCGACcUCGcUCGGCccgaUCGCgCGCUg -3'
miRNA:   3'- -UGGGCUGcAGC-AGCUGc---AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 8123 0.69 0.315739
Target:  5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3'
miRNA:   3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 9998 0.69 0.315739
Target:  5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3'
miRNA:   3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 36662 0.69 0.322423
Target:  5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 46341 0.69 0.346249
Target:  5'- cGCCC-ACG-Caa-GGCGUCGCCCGCg -3'
miRNA:   3'- -UGGGcUGCaGcagCUGCAGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 6893 0.69 0.323172
Target:  5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3'
miRNA:   3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5'
12775 3' -60.3 NC_003387.1 + 17546 0.69 0.323172
Target:  5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3'
miRNA:   3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 52256 0.69 0.330735
Target:  5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3'
miRNA:   3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 10781 0.69 0.329973
Target:  5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3'
miRNA:   3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5'
12775 3' -60.3 NC_003387.1 + 11056 0.68 0.367186
Target:  5'- gACgCCGAaccacaggucgcaGUCGUCGACGUacCGCagCGCCu -3'
miRNA:   3'- -UG-GGCUg------------CAGCAGCUGCA--GCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 22679 0.68 0.378814
Target:  5'- cGCUCGugGgcggUGUCGACGgcggCGCUgGCg -3'
miRNA:   3'- -UGGGCugCa---GCAGCUGCa---GCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 4926 0.68 0.377976
Target:  5'- uGCCCGGCGcggCGUCGcGCGUUGUcgaacgugacagaCCaGCCg -3'
miRNA:   3'- -UGGGCUGCa--GCAGC-UGCAGCG-------------GG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 48153 0.68 0.370483
Target:  5'- gGCCuCGGCGagcagcUUGUCGGCcuugucguaGUCGCCCGUUu -3'
miRNA:   3'- -UGG-GCUGC------AGCAGCUG---------CAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48031 0.68 0.362278
Target:  5'- uGCUCGACGagguucagcaccUCGUcuugcuuggCGGCGUCGgCCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCA---------GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14195 0.68 0.362278
Target:  5'- cACCaUGACGcCGUCGGCGcUCaCuuGCCg -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGC-AGcGggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.