Results 61 - 80 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 36604 | 0.7 | 0.294218 |
Target: 5'- aACCCGGCGU--UCGAC-UCGCggcugcuggCCGCCg -3' miRNA: 3'- -UGGGCUGCAgcAGCUGcAGCG---------GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 44390 | 0.7 | 0.301262 |
Target: 5'- -gUCGGgGUCGUCGAgGUCGgCCggGCCg -3' miRNA: 3'- ugGGCUgCAGCAGCUgCAGCgGG--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 31896 | 0.7 | 0.301262 |
Target: 5'- -gCCGACGUCGcgCGACGUauccCCUGCUc -3' miRNA: 3'- ugGGCUGCAGCa-GCUGCAgc--GGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 21553 | 0.7 | 0.308436 |
Target: 5'- cGCCCG-CGUCGUCGugcagacCGUgGCCCagGCg -3' miRNA: 3'- -UGGGCuGCAGCAGCu------GCAgCGGG--CGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 16318 | 0.7 | 0.308436 |
Target: 5'- aGCUCGGCGccggUGUCGAUGUUGaCCGCg -3' miRNA: 3'- -UGGGCUGCa---GCAGCUGCAGCgGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 44382 | 0.7 | 0.308436 |
Target: 5'- gACCCgGugGUCGacgaGGCGaaGCUCGCCg -3' miRNA: 3'- -UGGG-CugCAGCag--CUGCagCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 8123 | 0.69 | 0.315739 |
Target: 5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3' miRNA: 3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 9998 | 0.69 | 0.315739 |
Target: 5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3' miRNA: 3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 30008 | 0.69 | 0.315739 |
Target: 5'- cGCCCGAC-UgGUCGGuaUCGCCCagGCCg -3' miRNA: 3'- -UGGGCUGcAgCAGCUgcAGCGGG--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 49184 | 0.69 | 0.315739 |
Target: 5'- cGCaggCGGCGgcCGUCGACGUUgcugaGCCCGCa -3' miRNA: 3'- -UGg--GCUGCa-GCAGCUGCAG-----CGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 9024 | 0.69 | 0.322423 |
Target: 5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3' miRNA: 3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 36662 | 0.69 | 0.322423 |
Target: 5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3' miRNA: 3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 2846 | 0.69 | 0.323172 |
Target: 5'- gACgCCGACGacaugaUCGUCGGugagGUCGCcCCGCUg -3' miRNA: 3'- -UG-GGCUGC------AGCAGCUg---CAGCG-GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 17546 | 0.69 | 0.323172 |
Target: 5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3' miRNA: 3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 6893 | 0.69 | 0.323172 |
Target: 5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3' miRNA: 3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 43774 | 0.69 | 0.323172 |
Target: 5'- uACCagGACGacaccaGgacCGGCGUCGCCCGCUu -3' miRNA: 3'- -UGGg-CUGCag----Ca--GCUGCAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 10781 | 0.69 | 0.329973 |
Target: 5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3' miRNA: 3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 43300 | 0.69 | 0.330735 |
Target: 5'- cGCCCGcgucguacuCGUCGgcccacuccUCGGCGaucgucUUGCCCGCCu -3' miRNA: 3'- -UGGGCu--------GCAGC---------AGCUGC------AGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 14897 | 0.69 | 0.330735 |
Target: 5'- uGCCCGACcUCGcUCGGCccgaUCGCgCGCUg -3' miRNA: 3'- -UGGGCUGcAGC-AGCUGc---AGCGgGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 52256 | 0.69 | 0.330735 |
Target: 5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3' miRNA: 3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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