miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 14897 0.69 0.330735
Target:  5'- uGCCCGACcUCGcUCGGCccgaUCGCgCGCUg -3'
miRNA:   3'- -UGGGCUGcAGC-AGCUGc---AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34550 0.69 0.335335
Target:  5'- -gCCGAuCGUCagcggGUCGACGUCGaacucgaugccaaCCGCCu -3'
miRNA:   3'- ugGGCU-GCAG-----CAGCUGCAGCg------------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24326 0.69 0.337652
Target:  5'- uGCUCGGCGaUCGUUuccuGCGUcagccacgaguugCGCCCGCCc -3'
miRNA:   3'- -UGGGCUGC-AGCAGc---UGCA-------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 13407 0.69 0.338428
Target:  5'- -gCCGACGguuaaGUCGGCGcUCGCCgGUg -3'
miRNA:   3'- ugGGCUGCag---CAGCUGC-AGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 21532 0.69 0.338428
Target:  5'- gGCgCG-CGUCGcguUCGACGUgcCGCCCGgCa -3'
miRNA:   3'- -UGgGCuGCAGC---AGCUGCA--GCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 7620 0.69 0.338428
Target:  5'- cACCgCGGCGUCGaCGACc-UGgCCGCCg -3'
miRNA:   3'- -UGG-GCUGCAGCaGCUGcaGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 46341 0.69 0.346249
Target:  5'- cGCCC-ACG-Caa-GGCGUCGCCCGCg -3'
miRNA:   3'- -UGGGcUGCaGcagCUGCAGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 9338 0.69 0.346249
Target:  5'- -gUCGACGUCGUCGAgcaccaggaCGUCGaCgaGCCg -3'
miRNA:   3'- ugGGCUGCAGCAGCU---------GCAGC-GggCGG- -5'
12775 3' -60.3 NC_003387.1 + 23039 0.69 0.346249
Target:  5'- gACCuCGGCcaCGUCGACGUCGa-CGUCg -3'
miRNA:   3'- -UGG-GCUGcaGCAGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 478 0.69 0.346249
Target:  5'- -aCCGGCGcgagcugcUCGUCGcgauGCG-CGCCCGCg -3'
miRNA:   3'- ugGGCUGC--------AGCAGC----UGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 22993 0.69 0.346249
Target:  5'- cGCCCGcguagcugcCGUCGUCGGCcuggGCgCCGCCg -3'
miRNA:   3'- -UGGGCu--------GCAGCAGCUGcag-CG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18604 0.69 0.353399
Target:  5'- cGCaCCG-CGaCGUCGACGcCGCcgaucugCCGCCg -3'
miRNA:   3'- -UG-GGCuGCaGCAGCUGCaGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18146 0.69 0.353399
Target:  5'- cACCUcaaGGCGguuggcaUCGaguUCGACGUCGaCCCGCUg -3'
miRNA:   3'- -UGGG---CUGC-------AGC---AGCUGCAGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34537 0.68 0.362278
Target:  5'- uGCCCGuCGacccgcUCGaCGACGUCGUguauaUCGCCg -3'
miRNA:   3'- -UGGGCuGC------AGCaGCUGCAGCG-----GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6599 0.68 0.362278
Target:  5'- aACCCGGUGUUccgCGACGacUCGUUCGCCg -3'
miRNA:   3'- -UGGGCUGCAGca-GCUGC--AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48031 0.68 0.362278
Target:  5'- uGCUCGACGagguucagcaccUCGUcuugcuuggCGGCGUCGgCCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCA---------GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14195 0.68 0.362278
Target:  5'- cACCaUGACGcCGUCGGCGcUCaCuuGCCg -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGC-AGcGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 11056 0.68 0.367186
Target:  5'- gACgCCGAaccacaggucgcaGUCGUCGACGUacCGCagCGCCu -3'
miRNA:   3'- -UG-GGCUg------------CAGCAGCUGCA--GCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 6439 0.68 0.370483
Target:  5'- gGCCguCGAgGUCGUgggCGGCGUCGCCaacgaGUCc -3'
miRNA:   3'- -UGG--GCUgCAGCA---GCUGCAGCGGg----CGG- -5'
12775 3' -60.3 NC_003387.1 + 48153 0.68 0.370483
Target:  5'- gGCCuCGGCGagcagcUUGUCGGCcuugucguaGUCGCCCGUUu -3'
miRNA:   3'- -UGG-GCUGC------AGCAGCUG---------CAGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.