miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 4926 0.68 0.377976
Target:  5'- uGCCCGGCGcggCGUCGcGCGUUGUcgaacgugacagaCCaGCCg -3'
miRNA:   3'- -UGGGCUGCa--GCAGC-UGCAGCG-------------GG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 22679 0.68 0.378814
Target:  5'- cGCUCGugGgcggUGUCGACGgcggCGCUgGCg -3'
miRNA:   3'- -UGGGCugCa---GCAGCUGCa---GCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 30213 0.68 0.378814
Target:  5'- uACgCCGACGUCGagcgcgccgcCGAggcCGUCGCCCGgUa -3'
miRNA:   3'- -UG-GGCUGCAGCa---------GCU---GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 31037 0.68 0.378814
Target:  5'- cGCCgaGGCGgccagggCGUCGGCGaacacgugcUCGgCCGCCg -3'
miRNA:   3'- -UGGg-CUGCa------GCAGCUGC---------AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 37396 0.68 0.38727
Target:  5'- aACUCGACGagccagUCGUCGccgcgcagcacaAUGUCGCCggUGCCg -3'
miRNA:   3'- -UGGGCUGC------AGCAGC------------UGCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 25897 0.68 0.38727
Target:  5'- cCCCGGCGUCcagggCGGCG-CGCUCaCCg -3'
miRNA:   3'- uGGGCUGCAGca---GCUGCaGCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 16725 0.68 0.38727
Target:  5'- gACCuCGcCGUCGaUCGugcccuCGUCGUcgCCGCCg -3'
miRNA:   3'- -UGG-GCuGCAGC-AGCu-----GCAGCG--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 27144 0.68 0.39585
Target:  5'- uGCCCGcCGggGUCGGCGcCGCCggggaacgugUGCCc -3'
miRNA:   3'- -UGGGCuGCagCAGCUGCaGCGG----------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 48565 0.68 0.39585
Target:  5'- uGCCaGGCGUgCaUCGACGccCGCCuCGCCg -3'
miRNA:   3'- -UGGgCUGCA-GcAGCUGCa-GCGG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 12610 0.68 0.39585
Target:  5'- uGCCCGACGcCGg-GcCGcCGCCUGCg -3'
miRNA:   3'- -UGGGCUGCaGCagCuGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 3067 0.68 0.39585
Target:  5'- cGCuCCGACGUCGacccacUCGGgGccaaGCUCGCCg -3'
miRNA:   3'- -UG-GGCUGCAGC------AGCUgCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 1447 0.68 0.39585
Target:  5'- gGCUCGGgGUCGUCGuccuCGUCGaggUCGUCg -3'
miRNA:   3'- -UGGGCUgCAGCAGCu---GCAGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51296 0.68 0.39585
Target:  5'- aGCCCuGCcagcUCGUCGGCGgcggCGCCuCGCa -3'
miRNA:   3'- -UGGGcUGc---AGCAGCUGCa---GCGG-GCGg -5'
12775 3' -60.3 NC_003387.1 + 35216 0.68 0.403676
Target:  5'- -aCCGccuCGUCGUCGAUcauuuccauaGUCGCggccaugCCGCCg -3'
miRNA:   3'- ugGGCu--GCAGCAGCUG----------CAGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 46037 0.68 0.404551
Target:  5'- gACgCCGAgCGUCGUCGAgGaucugcagCGCaCCGCg -3'
miRNA:   3'- -UG-GGCU-GCAGCAGCUgCa-------GCG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 31183 0.68 0.404551
Target:  5'- uGCCgGGCGgcaCGUCGaacGCGaCGCgCGCCu -3'
miRNA:   3'- -UGGgCUGCa--GCAGC---UGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31467 0.68 0.404551
Target:  5'- uGCCCGACuccUCGUCG-CGgCGCaccaUGCCg -3'
miRNA:   3'- -UGGGCUGc--AGCAGCuGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 48709 0.68 0.404551
Target:  5'- cGCuuGGCGUUGUCGAgcacCGUgCGCCg -3'
miRNA:   3'- -UGggCUGCAGCAGCUgca-GCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18899 0.68 0.404551
Target:  5'- uGCUuaaaGACGcCGUCGGCGgcgCGCUCGaCCc -3'
miRNA:   3'- -UGGg---CUGCaGCAGCUGCa--GCGGGC-GG- -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.