miRNA display CGI


Results 121 - 140 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 31183 0.68 0.404551
Target:  5'- uGCCgGGCGgcaCGUCGaacGCGaCGCgCGCCu -3'
miRNA:   3'- -UGGgCUGCa--GCAGC---UGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 46037 0.68 0.404551
Target:  5'- gACgCCGAgCGUCGUCGAgGaucugcagCGCaCCGCg -3'
miRNA:   3'- -UG-GGCU-GCAGCAGCUgCa-------GCG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 658 0.67 0.412485
Target:  5'- cGCCCGAUGaaccauUCGaCGGCGacgcuuagcgaggUCGCgCGCCa -3'
miRNA:   3'- -UGGGCUGC------AGCaGCUGC-------------AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 12998 0.67 0.412485
Target:  5'- aGCUuaaGGCGUCGUCGGgcaagguCGacagCGCCCGCa -3'
miRNA:   3'- -UGGg--CUGCAGCAGCU-------GCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 1761 0.67 0.413372
Target:  5'- aGCCCGGCGg---CGGCGcuggCGCCCGa- -3'
miRNA:   3'- -UGGGCUGCagcaGCUGCa---GCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 6690 0.67 0.413372
Target:  5'- cCUCGACGaCGcUCGGCGUCuuGCaCCGCg -3'
miRNA:   3'- uGGGCUGCaGC-AGCUGCAG--CG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 45936 0.67 0.413372
Target:  5'- uGCCCGAgCGuguUCGcCGACG--GCCCGCg -3'
miRNA:   3'- -UGGGCU-GC---AGCaGCUGCagCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 17889 0.67 0.42231
Target:  5'- gGCCCGcGCGggcCGUCGACGaacauucucgaCGCCC-CCg -3'
miRNA:   3'- -UGGGC-UGCa--GCAGCUGCa----------GCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 17463 0.67 0.42231
Target:  5'- uACCCGcggcgccaguUGUCGUCGGCGUacuugcgggCGCCgCgGCCg -3'
miRNA:   3'- -UGGGCu---------GCAGCAGCUGCA---------GCGG-G-CGG- -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 30346 0.67 0.425918
Target:  5'- uGCCCGGCGgccacauucacgaGUCGAC--CGCCUGCa -3'
miRNA:   3'- -UGGGCUGCag-----------CAGCUGcaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 22517 0.67 0.431364
Target:  5'- cGCUCGACGUCGgcguaccggcUCGGCGacugcuccUUGCCCGa- -3'
miRNA:   3'- -UGGGCUGCAGC----------AGCUGC--------AGCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 33733 0.67 0.431364
Target:  5'- gGCCC-ACGccgccagcUCGUCGAUGcUCGCCggggUGCCg -3'
miRNA:   3'- -UGGGcUGC--------AGCAGCUGC-AGCGG----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 37115 0.67 0.431364
Target:  5'- aACCCGuuGUCG-CGAuaaugguccgagUGUUGCCCGgCa -3'
miRNA:   3'- -UGGGCugCAGCaGCU------------GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 40166 0.67 0.431364
Target:  5'- gGCCCGAuCGUCGUCGA-GcC-CUCGCa -3'
miRNA:   3'- -UGGGCU-GCAGCAGCUgCaGcGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 51961 0.67 0.431364
Target:  5'- uGCCCGACGUCGcUGcCG-CGgUgGCCg -3'
miRNA:   3'- -UGGGCUGCAGCaGCuGCaGCgGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 19142 0.67 0.439608
Target:  5'- gACCgGGCGguggcUCGUCGACG-CugucgagggcgcgGCCCGCa -3'
miRNA:   3'- -UGGgCUGC-----AGCAGCUGCaG-------------CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 18039 0.67 0.439608
Target:  5'- uGCCCGAgGcggCGUuucagaacuucacCGGCGUUGCCCaGCg -3'
miRNA:   3'- -UGGGCUgCa--GCA-------------GCUGCAGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 42646 0.67 0.44053
Target:  5'- -gCCGAcCGUCGUCcugGUCGC-CGCCg -3'
miRNA:   3'- ugGGCU-GCAGCAGcugCAGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14397 0.67 0.44053
Target:  5'- gACUCGugGuggUCGUCGugGUCugagacuguGCCCGg- -3'
miRNA:   3'- -UGGGCugC---AGCAGCugCAG---------CGGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.