Results 81 - 100 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 23039 | 0.69 | 0.346249 |
Target: 5'- gACCuCGGCcaCGUCGACGUCGa-CGUCg -3' miRNA: 3'- -UGG-GCUGcaGCAGCUGCAGCggGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 23044 | 0.66 | 0.478259 |
Target: 5'- uGCCCGGCGgCGUgcCGAUcaCGCacuaCGCCg -3' miRNA: 3'- -UGGGCUGCaGCA--GCUGcaGCGg---GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 23329 | 0.71 | 0.260921 |
Target: 5'- cGCCCGGCGggCGagaUCGAgGUCGUCaccggCGCCg -3' miRNA: 3'- -UGGGCUGCa-GC---AGCUgCAGCGG-----GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 23480 | 0.67 | 0.449806 |
Target: 5'- gACCCGcCGuUCGagCGGCGguucuggUGCCCgGCCa -3' miRNA: 3'- -UGGGCuGC-AGCa-GCUGCa------GCGGG-CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24149 | 0.72 | 0.203591 |
Target: 5'- aGCuuGaggGCGUCGUCGACGgcgaUCGC-CGCCu -3' miRNA: 3'- -UGggC---UGCAGCAGCUGC----AGCGgGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24218 | 0.77 | 0.095123 |
Target: 5'- uGCCgGuuaGCGUCGUCGugGUUGC-CGCCg -3' miRNA: 3'- -UGGgC---UGCAGCAGCugCAGCGgGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24326 | 0.69 | 0.337652 |
Target: 5'- uGCUCGGCGaUCGUUuccuGCGUcagccacgaguugCGCCCGCCc -3' miRNA: 3'- -UGGGCUGC-AGCAGc---UGCA-------------GCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24634 | 0.71 | 0.249097 |
Target: 5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3' miRNA: 3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 25268 | 0.71 | 0.254642 |
Target: 5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3' miRNA: 3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 25897 | 0.68 | 0.38727 |
Target: 5'- cCCCGGCGUCcagggCGGCG-CGCUCaCCg -3' miRNA: 3'- uGGGCUGCAGca---GCUGCaGCGGGcGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 26196 | 0.74 | 0.153461 |
Target: 5'- uGCCUGACGgcUCGUCGuCGUCGgCCuCGCa -3' miRNA: 3'- -UGGGCUGC--AGCAGCuGCAGC-GG-GCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 27144 | 0.68 | 0.39585 |
Target: 5'- uGCCCGcCGggGUCGGCGcCGCCggggaacgugUGCCc -3' miRNA: 3'- -UGGGCuGCagCAGCUGCaGCGG----------GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 27430 | 0.67 | 0.441453 |
Target: 5'- cGCgCCGACGUCGcccuggcugacugccCGAUGUgCGaCCUGCCc -3' miRNA: 3'- -UG-GGCUGCAGCa--------------GCUGCA-GC-GGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 27806 | 0.66 | 0.478259 |
Target: 5'- cCCCGGCGgUGccCGACGagaaguacCGCCCGUCg -3' miRNA: 3'- uGGGCUGCaGCa-GCUGCa-------GCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 28475 | 0.73 | 0.198502 |
Target: 5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3' miRNA: 3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29007 | 0.66 | 0.497712 |
Target: 5'- uGCgCCGA-GUCGUUcgccgccugGGCGUUGCUCGCg -3' miRNA: 3'- -UG-GGCUgCAGCAG---------CUGCAGCGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29172 | 0.66 | 0.50757 |
Target: 5'- gACCCGACGaUCGagGACGguaucgacaUgGCCCGa- -3' miRNA: 3'- -UGGGCUGC-AGCagCUGC---------AgCGGGCgg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29384 | 0.7 | 0.280516 |
Target: 5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3' miRNA: 3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29678 | 0.71 | 0.254642 |
Target: 5'- -gCCGACGUCGacgUCGACGUgGCCgagGUCg -3' miRNA: 3'- ugGGCUGCAGC---AGCUGCAgCGGg--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29734 | 0.75 | 0.131088 |
Target: 5'- gGCCuUGcCGUCGUCGGCGcCGCCCGaCa -3' miRNA: 3'- -UGG-GCuGCAGCAGCUGCaGCGGGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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