miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 30008 0.69 0.315739
Target:  5'- cGCCCGAC-UgGUCGGuaUCGCCCagGCCg -3'
miRNA:   3'- -UGGGCUGcAgCAGCUgcAGCGGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 30213 0.68 0.378814
Target:  5'- uACgCCGACGUCGagcgcgccgcCGAggcCGUCGCCCGgUa -3'
miRNA:   3'- -UG-GGCUGCAGCa---------GCU---GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 30346 0.67 0.425918
Target:  5'- uGCCCGGCGgccacauucacgaGUCGAC--CGCCUGCa -3'
miRNA:   3'- -UGGGCUGCag-----------CAGCUGcaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 30897 0.73 0.174693
Target:  5'- cGCCgGgaaaGCGUUGgucgccaCGGCGUCGCUCGCCg -3'
miRNA:   3'- -UGGgC----UGCAGCa------GCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31037 0.68 0.378814
Target:  5'- cGCCgaGGCGgccagggCGUCGGCGaacacgugcUCGgCCGCCg -3'
miRNA:   3'- -UGGg-CUGCa------GCAGCUGC---------AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31183 0.68 0.404551
Target:  5'- uGCCgGGCGgcaCGUCGaacGCGaCGCgCGCCu -3'
miRNA:   3'- -UGGgCUGCa--GCAGC---UGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31430 0.66 0.527528
Target:  5'- uGCUCGACGgccUCGaCGACGaCGCggugCGCCa -3'
miRNA:   3'- -UGGGCUGC---AGCaGCUGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 31467 0.68 0.404551
Target:  5'- uGCCCGACuccUCGUCG-CGgCGCaccaUGCCg -3'
miRNA:   3'- -UGGGCUGc--AGCAGCuGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 31734 0.73 0.193032
Target:  5'- -gCCGACGagagcuaUCGcggcauucgCGGCGUUGCCCGCCc -3'
miRNA:   3'- ugGGCUGC-------AGCa--------GCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31896 0.7 0.301262
Target:  5'- -gCCGACGUCGcgCGACGUauccCCUGCUc -3'
miRNA:   3'- ugGGCUGCAGCa-GCUGCAgc--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 32418 0.73 0.188656
Target:  5'- uACCgGACGcCGUUGACGUagcaGCCCaGCUc -3'
miRNA:   3'- -UGGgCUGCaGCAGCUGCAg---CGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 33080 0.72 0.203591
Target:  5'- cGCCgCGAgCGUaacCG-CGUCGCCCGCCg -3'
miRNA:   3'- -UGG-GCU-GCAgcaGCuGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 33236 0.66 0.49673
Target:  5'- gGCCgucaaGACGUaCGUgcucgaCGACGUCcugcccgGCCUGCCg -3'
miRNA:   3'- -UGGg----CUGCA-GCA------GCUGCAG-------CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 33733 0.67 0.431364
Target:  5'- gGCCC-ACGccgccagcUCGUCGAUGcUCGCCggggUGCCg -3'
miRNA:   3'- -UGGGcUGC--------AGCAGCUGC-AGCGG----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 34117 0.7 0.287303
Target:  5'- -aUCGGCGgCGUCGACGUCGCggugCGCg -3'
miRNA:   3'- ugGGCUGCaGCAGCUGCAGCGg---GCGg -5'
12775 3' -60.3 NC_003387.1 + 34145 0.66 0.515516
Target:  5'- aACUCGACGagcaccagGGCGUCGCCCucgGCCu -3'
miRNA:   3'- -UGGGCUGCagcag---CUGCAGCGGG---CGG- -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34537 0.68 0.362278
Target:  5'- uGCCCGuCGacccgcUCGaCGACGUCGUguauaUCGCCg -3'
miRNA:   3'- -UGGGCuGC------AGCaGCUGCAGCG-----GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34550 0.69 0.335335
Target:  5'- -gCCGAuCGUCagcggGUCGACGUCGaacucgaugccaaCCGCCu -3'
miRNA:   3'- ugGGCU-GCAG-----CAGCUGCAGCg------------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.