miRNA display CGI


Results 121 - 140 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 35216 0.68 0.403676
Target:  5'- -aCCGccuCGUCGUCGAUcauuuccauaGUCGCggccaugCCGCCg -3'
miRNA:   3'- ugGGCu--GCAGCAGCUG----------CAGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35318 0.66 0.50757
Target:  5'- aGCCUGACGgCGUCGcCGgUCGCgggaauuuCgGCCa -3'
miRNA:   3'- -UGGGCUGCaGCAGCuGC-AGCG--------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 35596 0.8 0.061502
Target:  5'- aGCCgguCGAgGUCGUCGAgCGUCGCCCccGCCa -3'
miRNA:   3'- -UGG---GCUgCAGCAGCU-GCAGCGGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 35668 0.71 0.242455
Target:  5'- cACUCGaucGCGUCcUCGACGaCGCCCGgCg -3'
miRNA:   3'- -UGGGC---UGCAGcAGCUGCaGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 35731 0.72 0.219542
Target:  5'- cGCUCGGgGUCGaUGACG-CaGCCCGCCc -3'
miRNA:   3'- -UGGGCUgCAGCaGCUGCaG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35806 0.74 0.165902
Target:  5'- uGCCuCGGCGcCGUCGGCG-CGaugcucucguacCCCGCCa -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGCaGC------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35999 0.66 0.478259
Target:  5'- gACUCGGCGUCGUCGccgaucacgAgGUCGaaCGUCu -3'
miRNA:   3'- -UGGGCUGCAGCAGC---------UgCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36147 0.66 0.50757
Target:  5'- uCCCGGCGUUGcCGcCGUUGCgCaCCu -3'
miRNA:   3'- uGGGCUGCAGCaGCuGCAGCGgGcGG- -5'
12775 3' -60.3 NC_003387.1 + 36604 0.7 0.294218
Target:  5'- aACCCGGCGU--UCGAC-UCGCggcugcuggCCGCCg -3'
miRNA:   3'- -UGGGCUGCAgcAGCUGcAGCG---------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36662 0.69 0.322423
Target:  5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 36781 0.66 0.517511
Target:  5'- cACUCGGCGcUgGcCGACG-CGCaCGCCa -3'
miRNA:   3'- -UGGGCUGC-AgCaGCUGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36888 0.66 0.478259
Target:  5'- -gCCGACGggcaccgCGUCGGCGUCacaaCCGgCg -3'
miRNA:   3'- ugGGCUGCa------GCAGCUGCAGcg--GGCgG- -5'
12775 3' -60.3 NC_003387.1 + 37058 0.66 0.49673
Target:  5'- gGCCUGGCGagcgggcauucguUCGcCGACaugGUCGaCCuCGCCg -3'
miRNA:   3'- -UGGGCUGC-------------AGCaGCUG---CAGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 37111 0.72 0.230759
Target:  5'- cCUCGACGUgcUCGACGUCGgCCggGCCg -3'
miRNA:   3'- uGGGCUGCAgcAGCUGCAGCgGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 37115 0.67 0.431364
Target:  5'- aACCCGuuGUCG-CGAuaaugguccgagUGUUGCCCGgCa -3'
miRNA:   3'- -UGGGCugCAGCaGCU------------GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 37287 0.73 0.174693
Target:  5'- cGCCUGGCGcgcUCGUCGGCGcggucgUCGaCCgCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCAGCUGC------AGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 37396 0.68 0.38727
Target:  5'- aACUCGACGagccagUCGUCGccgcgcagcacaAUGUCGCCggUGCCg -3'
miRNA:   3'- -UGGGCUGC------AGCAGC------------UGCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 38150 0.7 0.273857
Target:  5'- cGCuuGGCGUagaaCGgccaggCGGCGUCGaCCGCCa -3'
miRNA:   3'- -UGggCUGCA----GCa-----GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 38198 0.72 0.219542
Target:  5'- -aCCGA-GUUGUUGuCGUUGCCCGUCg -3'
miRNA:   3'- ugGGCUgCAGCAGCuGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 39046 0.7 0.287303
Target:  5'- aACgCCGACauagCGUCGACGgCGCCCucggcgaccgaGCCg -3'
miRNA:   3'- -UG-GGCUGca--GCAGCUGCaGCGGG-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.