miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 36662 0.69 0.322423
Target:  5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 36604 0.7 0.294218
Target:  5'- aACCCGGCGU--UCGAC-UCGCggcugcuggCCGCCg -3'
miRNA:   3'- -UGGGCUGCAgcAGCUGcAGCG---------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36147 0.66 0.50757
Target:  5'- uCCCGGCGUUGcCGcCGUUGCgCaCCu -3'
miRNA:   3'- uGGGCUGCAGCaGCuGCAGCGgGcGG- -5'
12775 3' -60.3 NC_003387.1 + 35999 0.66 0.478259
Target:  5'- gACUCGGCGUCGUCGccgaucacgAgGUCGaaCGUCu -3'
miRNA:   3'- -UGGGCUGCAGCAGC---------UgCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35806 0.74 0.165902
Target:  5'- uGCCuCGGCGcCGUCGGCG-CGaugcucucguacCCCGCCa -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGCaGC------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35731 0.72 0.219542
Target:  5'- cGCUCGGgGUCGaUGACG-CaGCCCGCCc -3'
miRNA:   3'- -UGGGCUgCAGCaGCUGCaG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35668 0.71 0.242455
Target:  5'- cACUCGaucGCGUCcUCGACGaCGCCCGgCg -3'
miRNA:   3'- -UGGGC---UGCAGcAGCUGCaGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 35596 0.8 0.061502
Target:  5'- aGCCgguCGAgGUCGUCGAgCGUCGCCCccGCCa -3'
miRNA:   3'- -UGG---GCUgCAGCAGCU-GCAGCGGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 35318 0.66 0.50757
Target:  5'- aGCCUGACGgCGUCGcCGgUCGCgggaauuuCgGCCa -3'
miRNA:   3'- -UGGGCUGCaGCAGCuGC-AGCG--------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 35216 0.68 0.403676
Target:  5'- -aCCGccuCGUCGUCGAUcauuuccauaGUCGCggccaugCCGCCg -3'
miRNA:   3'- ugGGCu--GCAGCAGCUG----------CAGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34550 0.69 0.335335
Target:  5'- -gCCGAuCGUCagcggGUCGACGUCGaacucgaugccaaCCGCCu -3'
miRNA:   3'- ugGGCU-GCAG-----CAGCUGCAGCg------------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34537 0.68 0.362278
Target:  5'- uGCCCGuCGacccgcUCGaCGACGUCGUguauaUCGCCg -3'
miRNA:   3'- -UGGGCuGC------AGCaGCUGCAGCG-----GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34145 0.66 0.515516
Target:  5'- aACUCGACGagcaccagGGCGUCGCCCucgGCCu -3'
miRNA:   3'- -UGGGCUGCagcag---CUGCAGCGGG---CGG- -5'
12775 3' -60.3 NC_003387.1 + 34117 0.7 0.287303
Target:  5'- -aUCGGCGgCGUCGACGUCGCggugCGCg -3'
miRNA:   3'- ugGGCUGCaGCAGCUGCAGCGg---GCGg -5'
12775 3' -60.3 NC_003387.1 + 33733 0.67 0.431364
Target:  5'- gGCCC-ACGccgccagcUCGUCGAUGcUCGCCggggUGCCg -3'
miRNA:   3'- -UGGGcUGC--------AGCAGCUGC-AGCGG----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 33236 0.66 0.49673
Target:  5'- gGCCgucaaGACGUaCGUgcucgaCGACGUCcugcccgGCCUGCCg -3'
miRNA:   3'- -UGGg----CUGCA-GCA------GCUGCAG-------CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 33080 0.72 0.203591
Target:  5'- cGCCgCGAgCGUaacCG-CGUCGCCCGCCg -3'
miRNA:   3'- -UGG-GCU-GCAgcaGCuGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 32418 0.73 0.188656
Target:  5'- uACCgGACGcCGUUGACGUagcaGCCCaGCUc -3'
miRNA:   3'- -UGGgCUGCaGCAGCUGCAg---CGGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.