miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 31896 0.7 0.301262
Target:  5'- -gCCGACGUCGcgCGACGUauccCCUGCUc -3'
miRNA:   3'- ugGGCUGCAGCa-GCUGCAgc--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31734 0.73 0.193032
Target:  5'- -gCCGACGagagcuaUCGcggcauucgCGGCGUUGCCCGCCc -3'
miRNA:   3'- ugGGCUGC-------AGCa--------GCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31467 0.68 0.404551
Target:  5'- uGCCCGACuccUCGUCG-CGgCGCaccaUGCCg -3'
miRNA:   3'- -UGGGCUGc--AGCAGCuGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 31430 0.66 0.527528
Target:  5'- uGCUCGACGgccUCGaCGACGaCGCggugCGCCa -3'
miRNA:   3'- -UGGGCUGC---AGCaGCUGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 31183 0.68 0.404551
Target:  5'- uGCCgGGCGgcaCGUCGaacGCGaCGCgCGCCu -3'
miRNA:   3'- -UGGgCUGCa--GCAGC---UGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31037 0.68 0.378814
Target:  5'- cGCCgaGGCGgccagggCGUCGGCGaacacgugcUCGgCCGCCg -3'
miRNA:   3'- -UGGg-CUGCa------GCAGCUGC---------AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 30897 0.73 0.174693
Target:  5'- cGCCgGgaaaGCGUUGgucgccaCGGCGUCGCUCGCCg -3'
miRNA:   3'- -UGGgC----UGCAGCa------GCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 30346 0.67 0.425918
Target:  5'- uGCCCGGCGgccacauucacgaGUCGAC--CGCCUGCa -3'
miRNA:   3'- -UGGGCUGCag-----------CAGCUGcaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 30213 0.68 0.378814
Target:  5'- uACgCCGACGUCGagcgcgccgcCGAggcCGUCGCCCGgUa -3'
miRNA:   3'- -UG-GGCUGCAGCa---------GCU---GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 30008 0.69 0.315739
Target:  5'- cGCCCGAC-UgGUCGGuaUCGCCCagGCCg -3'
miRNA:   3'- -UGGGCUGcAgCAGCUgcAGCGGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 29734 0.75 0.131088
Target:  5'- gGCCuUGcCGUCGUCGGCGcCGCCCGaCa -3'
miRNA:   3'- -UGG-GCuGCAGCAGCUGCaGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 29678 0.71 0.254642
Target:  5'- -gCCGACGUCGacgUCGACGUgGCCgagGUCg -3'
miRNA:   3'- ugGGCUGCAGC---AGCUGCAgCGGg--CGG- -5'
12775 3' -60.3 NC_003387.1 + 29384 0.7 0.280516
Target:  5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3'
miRNA:   3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 29172 0.66 0.50757
Target:  5'- gACCCGACGaUCGagGACGguaucgacaUgGCCCGa- -3'
miRNA:   3'- -UGGGCUGC-AGCagCUGC---------AgCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 29007 0.66 0.497712
Target:  5'- uGCgCCGA-GUCGUUcgccgccugGGCGUUGCUCGCg -3'
miRNA:   3'- -UG-GGCUgCAGCAG---------CUGCAGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 28475 0.73 0.198502
Target:  5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3'
miRNA:   3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 27806 0.66 0.478259
Target:  5'- cCCCGGCGgUGccCGACGagaaguacCGCCCGUCg -3'
miRNA:   3'- uGGGCUGCaGCa-GCUGCa-------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 27430 0.67 0.441453
Target:  5'- cGCgCCGACGUCGcccuggcugacugccCGAUGUgCGaCCUGCCc -3'
miRNA:   3'- -UG-GGCUGCAGCa--------------GCUGCA-GC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 27144 0.68 0.39585
Target:  5'- uGCCCGcCGggGUCGGCGcCGCCggggaacgugUGCCc -3'
miRNA:   3'- -UGGGCuGCagCAGCUGCaGCGG----------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 26196 0.74 0.153461
Target:  5'- uGCCUGACGgcUCGUCGuCGUCGgCCuCGCa -3'
miRNA:   3'- -UGGGCUGC--AGCAGCuGCAGC-GG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.