miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 25897 0.68 0.38727
Target:  5'- cCCCGGCGUCcagggCGGCG-CGCUCaCCg -3'
miRNA:   3'- uGGGCUGCAGca---GCUGCaGCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 25268 0.71 0.254642
Target:  5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3'
miRNA:   3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24634 0.71 0.249097
Target:  5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3'
miRNA:   3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 24326 0.69 0.337652
Target:  5'- uGCUCGGCGaUCGUUuccuGCGUcagccacgaguugCGCCCGCCc -3'
miRNA:   3'- -UGGGCUGC-AGCAGc---UGCA-------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24218 0.77 0.095123
Target:  5'- uGCCgGuuaGCGUCGUCGugGUUGC-CGCCg -3'
miRNA:   3'- -UGGgC---UGCAGCAGCugCAGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24149 0.72 0.203591
Target:  5'- aGCuuGaggGCGUCGUCGACGgcgaUCGC-CGCCu -3'
miRNA:   3'- -UGggC---UGCAGCAGCUGC----AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 23480 0.67 0.449806
Target:  5'- gACCCGcCGuUCGagCGGCGguucuggUGCCCgGCCa -3'
miRNA:   3'- -UGGGCuGC-AGCa-GCUGCa------GCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 23329 0.71 0.260921
Target:  5'- cGCCCGGCGggCGagaUCGAgGUCGUCaccggCGCCg -3'
miRNA:   3'- -UGGGCUGCa-GC---AGCUgCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 23044 0.66 0.478259
Target:  5'- uGCCCGGCGgCGUgcCGAUcaCGCacuaCGCCg -3'
miRNA:   3'- -UGGGCUGCaGCA--GCUGcaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 23039 0.69 0.346249
Target:  5'- gACCuCGGCcaCGUCGACGUCGa-CGUCg -3'
miRNA:   3'- -UGG-GCUGcaGCAGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 22993 0.69 0.346249
Target:  5'- cGCCCGcguagcugcCGUCGUCGGCcuggGCgCCGCCg -3'
miRNA:   3'- -UGGGCu--------GCAGCAGCUGcag-CG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 22679 0.68 0.378814
Target:  5'- cGCUCGugGgcggUGUCGACGgcggCGCUgGCg -3'
miRNA:   3'- -UGGGCugCa---GCAGCUGCa---GCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 22612 0.66 0.527528
Target:  5'- cGCCCaAgGUCacUUGGCGgcccuggcCGCCCGCCg -3'
miRNA:   3'- -UGGGcUgCAGc-AGCUGCa-------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 22517 0.67 0.431364
Target:  5'- cGCUCGACGUCGgcguaccggcUCGGCGacugcuccUUGCCCGa- -3'
miRNA:   3'- -UGGGCUGCAGC----------AGCUGC--------AGCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 21553 0.7 0.308436
Target:  5'- cGCCCG-CGUCGUCGugcagacCGUgGCCCagGCg -3'
miRNA:   3'- -UGGGCuGCAGCAGCu------GCAgCGGG--CGg -5'
12775 3' -60.3 NC_003387.1 + 21532 0.69 0.338428
Target:  5'- gGCgCG-CGUCGcguUCGACGUgcCGCCCGgCa -3'
miRNA:   3'- -UGgGCuGCAGC---AGCUGCA--GCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 21041 0.74 0.161658
Target:  5'- cGCCUGACca-GUCGGCGUCGaaCGCCg -3'
miRNA:   3'- -UGGGCUGcagCAGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 20240 0.7 0.280516
Target:  5'- cACCaCGGCGcCGgggUCGACGcaaaCGCCCGCa -3'
miRNA:   3'- -UGG-GCUGCaGC---AGCUGCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 19588 0.66 0.517511
Target:  5'- uGCUCGGCGUCGacgugUGGCaGUCGUuccuugaCGCCg -3'
miRNA:   3'- -UGGGCUGCAGCa----GCUG-CAGCGg------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 19142 0.67 0.439608
Target:  5'- gACCgGGCGguggcUCGUCGACG-CugucgagggcgcgGCCCGCa -3'
miRNA:   3'- -UGGgCUGC-----AGCAGCUGCaG-------------CGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.