miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 18604 0.69 0.353399
Target:  5'- cGCaCCG-CGaCGUCGACGcCGCcgaucugCCGCCg -3'
miRNA:   3'- -UG-GGCuGCaGCAGCUGCaGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 30213 0.68 0.378814
Target:  5'- uACgCCGACGUCGagcgcgccgcCGAggcCGUCGCCCGgUa -3'
miRNA:   3'- -UG-GGCUGCAGCa---------GCU---GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 28475 0.73 0.198502
Target:  5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3'
miRNA:   3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 51508 0.71 0.234798
Target:  5'- aGCUCGACGagccaugcccCGUCGACGgccacccuugccccUgCGCCCGCCg -3'
miRNA:   3'- -UGGGCUGCa---------GCAGCUGC--------------A-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 7819 0.71 0.254642
Target:  5'- cGCCUGGCGgc--CGAgGUCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCagcaGCUgCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 25268 0.71 0.254642
Target:  5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3'
miRNA:   3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 50375 0.7 0.287303
Target:  5'- cGCUCGACGcCGaCGGCGgccUCGacaCCGCCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCUGC---AGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31896 0.7 0.301262
Target:  5'- -gCCGACGUCGcgCGACGUauccCCUGCUc -3'
miRNA:   3'- ugGGCUGCAGCa-GCUGCAgc--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49184 0.69 0.315739
Target:  5'- cGCaggCGGCGgcCGUCGACGUUgcugaGCCCGCa -3'
miRNA:   3'- -UGg--GCUGCa-GCAGCUGCAG-----CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 11420 0.69 0.330735
Target:  5'- cCCCGAggugcUGUCGUCGGugcuCGU-GCCCGCg -3'
miRNA:   3'- uGGGCU-----GCAGCAGCU----GCAgCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 29172 0.66 0.50757
Target:  5'- gACCCGACGaUCGagGACGguaucgacaUgGCCCGa- -3'
miRNA:   3'- -UGGGCUGC-AGCagCUGC---------AgCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 37058 0.66 0.49673
Target:  5'- gGCCUGGCGagcgggcauucguUCGcCGACaugGUCGaCCuCGCCg -3'
miRNA:   3'- -UGGGCUGC-------------AGCaGCUG---CAGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 18899 0.68 0.404551
Target:  5'- uGCUuaaaGACGcCGUCGGCGgcgCGCUCGaCCc -3'
miRNA:   3'- -UGGg---CUGCaGCAGCUGCa--GCGGGC-GG- -5'
12775 3' -60.3 NC_003387.1 + 48875 0.68 0.404551
Target:  5'- aGCCgGA--UCGUCGGCGcCGCCUaCCg -3'
miRNA:   3'- -UGGgCUgcAGCAGCUGCaGCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 17889 0.67 0.42231
Target:  5'- gGCCCGcGCGggcCGUCGACGaacauucucgaCGCCC-CCg -3'
miRNA:   3'- -UGGGC-UGCa--GCAGCUGCa----------GCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 40166 0.67 0.431364
Target:  5'- gGCCCGAuCGUCGUCGA-GcC-CUCGCa -3'
miRNA:   3'- -UGGGCU-GCAGCAGCUgCaGcGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 44415 0.67 0.44053
Target:  5'- -gCUGACGcugugcUCG-CGAUGcUGCCCGCCg -3'
miRNA:   3'- ugGGCUGC------AGCaGCUGCaGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3342 0.67 0.449806
Target:  5'- gGCCCGcucguuuggcGCgGUCGUCGACGgcaucaccaaGCUgGCCu -3'
miRNA:   3'- -UGGGC----------UG-CAGCAGCUGCag--------CGGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 50475 0.66 0.472496
Target:  5'- gGCCCgcGAgGUCGUCGGCaacuggcugacgcugGcCGCCUGaCCg -3'
miRNA:   3'- -UGGG--CUgCAGCAGCUG---------------CaGCGGGC-GG- -5'
12775 3' -60.3 NC_003387.1 + 36888 0.66 0.478259
Target:  5'- -gCCGACGggcaccgCGUCGGCGUCacaaCCGgCg -3'
miRNA:   3'- ugGGCUGCa------GCAGCUGCAGcg--GGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.