miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 25268 0.71 0.254642
Target:  5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3'
miRNA:   3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 30346 0.67 0.425918
Target:  5'- uGCCCGGCGgccacauucacgaGUCGAC--CGCCUGCa -3'
miRNA:   3'- -UGGGCUGCag-----------CAGCUGcaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 1761 0.67 0.413372
Target:  5'- aGCCCGGCGg---CGGCGcuggCGCCCGa- -3'
miRNA:   3'- -UGGGCUGCagcaGCUGCa---GCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 46037 0.68 0.404551
Target:  5'- gACgCCGAgCGUCGUCGAgGaucugcagCGCaCCGCg -3'
miRNA:   3'- -UG-GGCU-GCAGCAGCUgCa-------GCG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 28475 0.73 0.198502
Target:  5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3'
miRNA:   3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 51508 0.71 0.234798
Target:  5'- aGCUCGACGagccaugcccCGUCGACGgccacccuugccccUgCGCCCGCCg -3'
miRNA:   3'- -UGGGCUGCa---------GCAGCUGC--------------A-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 7819 0.71 0.254642
Target:  5'- cGCCUGGCGgc--CGAgGUCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCagcaGCUgCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 52256 0.69 0.330735
Target:  5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3'
miRNA:   3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 10781 0.69 0.329973
Target:  5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3'
miRNA:   3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5'
12775 3' -60.3 NC_003387.1 + 17546 0.69 0.323172
Target:  5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3'
miRNA:   3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6893 0.69 0.323172
Target:  5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3'
miRNA:   3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 6690 0.67 0.413372
Target:  5'- cCUCGACGaCGcUCGGCGUCuuGCaCCGCg -3'
miRNA:   3'- uGGGCUGCaGC-AGCUGCAG--CG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 8123 0.69 0.315739
Target:  5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3'
miRNA:   3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 9998 0.69 0.315739
Target:  5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3'
miRNA:   3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 9024 0.69 0.322423
Target:  5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3'
miRNA:   3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44023 0.66 0.478259
Target:  5'- --gCGGC-UCGUCGACGUCGgUCGgCa -3'
miRNA:   3'- uggGCUGcAGCAGCUGCAGCgGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 50279 0.66 0.478259
Target:  5'- gGCCUGGCGcgCGUCcauGCgGUUGCgCUGCCa -3'
miRNA:   3'- -UGGGCUGCa-GCAGc--UG-CAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36662 0.69 0.322423
Target:  5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.